PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G315100.9.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 339aa    MW: 37489.7 Da    PI: 9.4569
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G315100.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.75.7e-12239273135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C  C+t +   WR+gpdg+ +LCnaCG +y+++++
  Aqcoe5G315100.9.p 239 CMECKTDHPRFWRKGPDGKMSLCNACGTRYKRREM 273
                        899****************************9876 PP
2GATA39.95.8e-13299331134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C  C+t ++  WR+gpdg++ LCnaCG +y+k++
  Aqcoe5G315100.9.p 299 CMECKTDHSRFWRKGPDGES-LCNACGQRYKKRK 331
                        999*****************.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF082344.2E-2143110IPR013255Chromosome segregation protein Spc25
SMARTSM004014.4E-5233283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.29237275IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-10238274IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.19E-8238273No hitNo description
PfamPF003201.8E-9239272IPR000679Zinc finger, GATA-type
SMARTSM004015.5E-6293337IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.655293338IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-10296332No hitNo description
Gene3DG3DSA:3.30.50.104.5E-13298333IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.7E-10299330IPR000679Zinc finger, GATA-type
PROSITE patternPS003440299323IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MTTTKDENAI KSRQFLGLAT DKEKIQEIIF FCNRLCGFQI ESTHVFKFIF KNINAKDPNE  60
EYSFTVQLAH ETYTLMNCDP HLDGTKELIQ ELNQTDDVLK FVGIMREKFQ AAAANGSYTV  120
SASAPASSVP VGEGQRDNEN AFQVQAEEVD KIPEKVNHGR KRRSPASGSP NSVPLTPIRP  180
CMKLSCTEVP PGSAGSDFSV RRSARLKDIT GWTDSKGSTG GDSSMPVPAA KNDLSLKKCM  240
ECKTDHPRFW RKGPDGKMSL CNACGTRYKR REMKKLVVPG GGSSMPGPAA KNDRSVKKCM  300
ECKTDHSRFW RKGPDGESLC NACGQRYKKR KMEKLVST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EH910.0A0A2G5EH91_AQUCA; Uncharacterized protein
STRINGAquca_008_00096.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-07GATA transcription factor 23