PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G315100.8.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 280aa    MW: 30964.2 Da    PI: 8.7944
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G315100.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.14.2e-12239272134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C  C+t +   WR+gpdg+ +LCnaCG +y+k++
  Aqcoe5G315100.8.p 239 CMECKTDHPRFWRKGPDGKMSLCNACGQRYKKRK 272
                        899*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF082343.0E-2143110IPR013255Chromosome segregation protein Spc25
SMARTSM004012.8E-4233278IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.673237279IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.9E-9237273No hitNo description
Gene3DG3DSA:3.30.50.103.8E-11238274IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.6E-9239271IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTTTKDENAI KSRQFLGLAT DKEKIQEIIF FCNRLCGFQI ESTHVFKFIF KNINAKDPNE  60
EYSFTVQLAH ETYTLMNCDP HLDGTKELIQ ELNQTDDVLK FVGIMREKFQ AAAANGSYTV  120
SASAPASSVP VGEGQRDNEN AFQVQAEEVD KIPEKVNHGR KRRSPASGSP NSVPLTPIRP  180
CMKLSCTEVP PGSAGSDFSV RRSARLKDIT GWTDSKGSTG GDSSMPVPAA KNDLSLKKCM  240
ECKTDHPRFW RKGPDGKMSL CNACGQRYKK RKMEKLVST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EHE80.0A0A2G5EHE8_AQUCA; Uncharacterized protein
STRINGAquca_008_00096.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.12e-08GATA transcription factor 23