PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G315100.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | GATA | ||||||||
Protein Properties | Length: 402aa MW: 44457 Da PI: 9.7866 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 36.4 | 7.2e-12 | 242 | 276 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C C+t + WR+gpdg+ +LCnaCG +y+++++ Aqcoe5G315100.3.p 242 CMECKTDHPRFWRKGPDGKMSLCNACGTRYKRREM 276 899****************************9876 PP | |||||||
2 | GATA | 39.2 | 9.4e-13 | 302 | 335 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C C+t ++ WR+gpdg++ LCnaCG +y+++++ Aqcoe5G315100.3.p 302 CMECKTDHSRFWRKGPDGEP-LCNACGKRYKRREM 335 999*****************.**********9876 PP | |||||||
3 | GATA | 44.4 | 2.3e-14 | 361 | 394 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C C+t +T lWR+gpdg+ +LCnaCG +y+k++ Aqcoe5G315100.3.p 361 CMECKTEHTGLWRKGPDGKMSLCNACGQRYKKRK 394 999*****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08234 | 5.5E-21 | 43 | 110 | IPR013255 | Chromosome segregation protein Spc25 |
SMART | SM00401 | 4.4E-5 | 236 | 286 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.29 | 240 | 278 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.52E-8 | 241 | 276 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-10 | 241 | 277 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.2E-9 | 242 | 275 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 14.417 | 296 | 337 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.6E-6 | 296 | 345 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.37E-10 | 299 | 335 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-12 | 301 | 336 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 7.8E-10 | 302 | 334 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 302 | 326 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.3E-6 | 355 | 400 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.991 | 359 | 401 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.42E-10 | 359 | 395 | No hit | No description |
CDD | cd00202 | 2.94E-7 | 360 | 394 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.4E-13 | 360 | 396 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 361 | 386 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 9.9E-12 | 361 | 393 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MTTTKDENAI KSRQFLGLAT DKEKIQEIIF FCNRLCGFQI ESTHVFKFIF KNINAKDPNE 60 EYSFTVQLAH ETYTLMNCDP HLDGTKELIQ ELNQTDDVLK FVGIMREKFQ AAAANGSYTV 120 SASAPASSVP VGEGQRDNEN AFQVQAEEVD KIPEKVNHGR KRRSPASGSP NSVPLTPIRP 180 CMKLSCTEVP PGSAGSDFSV RRSARLKTTQ DITGWTDSKG STGGDSSMPV PAAKNDLSLK 240 KCMECKTDHP RFWRKGPDGK MSLCNACGTR YKRREMKKLV VPGGGSSMPG PAAKNDRSVK 300 KCMECKTDHS RFWRKGPDGE PLCNACGKRY KRREMKKLVV PGGDPSVPVP AAKNDLSLKK 360 CMECKTEHTG LWRKGPDGKM SLCNACGQRY KKRKMEKLVS T* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G5EHC0 | 0.0 | A0A2G5EHC0_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_008_00096.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 9e-09 | GATA transcription factor 23 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G315100.3.p |