PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G315100.12.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 395aa    MW: 43718.2 Da    PI: 9.8118
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G315100.12.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.47e-12235269135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C  C+t +   WR+gpdg+ +LCnaCG +y+++++
  Aqcoe5G315100.12.p 235 CMECKTDHPRFWRKGPDGKMSLCNACGTRYKRREM 269
                         899****************************9876 PP
2GATA39.39.2e-13295328135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C  C+t ++  WR+gpdg++ LCnaCG +y+++++
  Aqcoe5G315100.12.p 295 CMECKTDHSRFWRKGPDGEP-LCNACGKRYKRREM 328
                         999*****************.**********9876 PP
3GATA44.42.3e-14354387134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C  C+t +T lWR+gpdg+ +LCnaCG +y+k++
  Aqcoe5G315100.12.p 354 CMECKTEHTGLWRKGPDGKMSLCNACGQRYKKRK 387
                         999*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF082345.4E-2143110IPR013255Chromosome segregation protein Spc25
SMARTSM004014.4E-5229279IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.29233271IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-8234269No hitNo description
Gene3DG3DSA:3.30.50.101.4E-10234270IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.2E-9235268IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.417289330IPR000679Zinc finger, GATA-type
SMARTSM004014.6E-6289338IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.28E-10292328No hitNo description
Gene3DG3DSA:3.30.50.101.4E-12294329IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.6E-10295327IPR000679Zinc finger, GATA-type
PROSITE patternPS003440295319IPR000679Zinc finger, GATA-type
SMARTSM004014.3E-6348393IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-10352388No hitNo description
PROSITE profilePS5011411.991352394IPR000679Zinc finger, GATA-type
CDDcd002024.30E-7353387No hitNo description
Gene3DG3DSA:3.30.50.102.3E-13353389IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440354379IPR000679Zinc finger, GATA-type
PfamPF003209.7E-12354386IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MTTTKDENAI KSRQFLGLAT DKEKIQEIIF FCNRLCGFQI ESTHVFKFIF KNINAKDPNE  60
EYSFTVQLAH ETYTLMNCDP HLDGTKELIQ ELNQTDDVLK FVGIMREKFQ AAAANVSASA  120
PASSVPVGEG QRDNENAFQV QAEEVDKIPE KVNHGRKRRS PASGSPNSVP LTPIRPCMKL  180
SCTEVPPGSA GSDFSVRRSA RLKDITGWTD SKGSTGGDSS MPVPAAKNDL SLKKCMECKT  240
DHPRFWRKGP DGKMSLCNAC GTRYKRREMK KLVVPGGGSS MPGPAAKNDR SVKKCMECKT  300
DHSRFWRKGP DGEPLCNACG KRYKRREMKK LVVPGGDPSV PVPAAKNDLS LKKCMECKTE  360
HTGLWRKGPD GKMSLCNACG QRYKKRKMEK LVST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EH910.0A0A2G5EH91_AQUCA; Uncharacterized protein
STRINGAquca_008_00096.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.19e-09GATA transcription factor 23