PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G314600.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 689aa    MW: 79284.2 Da    PI: 8.034
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G314600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.65.6e-2062155190
               FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 
                        +fY+e+Ak +GFs+r+++++ +    +  t+r fvC + g++  ++++++k +r+r+++r+gC+a l+++k+      +w+vt + ++HnHe
  Aqcoe5G314600.3.p  62 EFYSEFAKGCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPIKTSNDNKPQRNRKSSRCGCQAYLRISKSVdlgIPEWRVTGFANHHNHE 153
                        6**************9998877356667999****************99**********************99766679************* PP

               FAR1  89 la 90 
                        l 
  Aqcoe5G314600.3.p 154 LL 155
                        96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1662155IPR004330FAR1 DNA binding domain
PfamPF105515.1E-20278369IPR018289MULE transposase domain
PROSITE profilePS509669.507557592IPR007527Zinc finger, SWIM-type
PfamPF044344.6E-7566590IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-4567594IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MSDETSQMIE GYDDPSDQRS FSLDDTSSTE ESLDNTRQFL QLSTHAAPYI GQRFVTHDAA  60
YEFYSEFAKG CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPIKTSND NKPQRNRKSS  120
RCGCQAYLRI SKSVDLGIPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS EVDKSRIFMF  180
AKTGISVQQM MRLLELEKCV EPGYLPFTEK DVRNLLQSFR KVDQEDDTVD LLRMCKNIRD  240
KDPNFRYDYT IDANNRLENI AWSYASSVQS YEIFGDAVVF DTTHRLTAFD MPIGIWVGVN  300
NYGMPCFFGC VLLREDNMRS YSWALKAFLR FMNDKAPQTI LTDQNMCLRE AISIEMPRTK  360
HGLCIWLIVA KFPSWFNAVL GERYNEWKAE FYRLYNLETM EDFELGWRDM VHSFGLHANR  420
HITNLFALRT LWALPYLRSH FFAGMTTTAQ SKSINAFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQAGEQQT MQQNLQNICL KTGAPMESHA ASVLTPYAFC KLQEELVLAA HYASFQFQLE  540
DGCFHVRHHT KLGGGRKVIW VPQDGILNCS CHHFEFSGIL CRHALRVLST MNCFQIPEHY  600
LPLRWRRINT SPIKLLQVTL NDHGERVQTL QSMVSTLMTE SSKSKERLQI ATEHISMLLS  660
RIREQPVLTH GSRDSSSTRL LISSSGHS*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276293.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2G5EHD00.0A0A2G5EHD0_AQUCA; Uncharacterized protein
STRINGAquca_008_00101.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]