PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G239800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C3H

Protein Properties

Length: 1072aa MW: 119631 Da PI: 8.9547

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G239800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.2	5.8e-08	219	239	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lC +f + G C++G++C+F H Aqcoe5G239800.1.p 219 PLCTDFVK-GRCRRGSQCRFLH 239 89****.*********** PP
2	zf-CCCH	24	6.9e-08	298	318	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 e C +f+r G C +G++C+F+H Aqcoe5G239800.1.p 298 EMCINFLR-GKCIRGSSCRFIH 318 78****.*********** PP
3	zf-CCCH	21.3	4.7e-07	355	375	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lC+ffa+ G C+ G +C+F+H Aqcoe5G239800.1.p 355 VLCKFFAA-GNCRKGISCNFSH 375 699999.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.385	215	242	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1E-4	215	241	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-5	219	239	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-5	220	241	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.915	294	321	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0037	294	320	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.5E-5	297	319	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.3E-5	300	318	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.126	351	378	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-5	352	376	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.1E-5	352	377	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.4E-4	356	375	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1072 aa Download sequence Send to blast
MTERVRKRTS KWDLTEDPPK FPIMSRQDNS SFGRGNESNH DSRSKHERNS SKNTGNRYPK 60 WPDTNPNSGL KSEGNSRWSS WEPPSGYSAD PKDDYDNRRF NEVSQTMKTW DRNRGYSTSM 120 SPGHDVWRHQ SRSRSPRSSW SKSHRSRSRS PPRRLRSRSR SPPRRLRSRS RSPPRGLRSR 180 SRSPPRGLRS RSRSPPHGLK RDLEGWNERT RGRSGVSPPL CTDFVKGRCR RGSQCRFLHQ 240 ENNDYEDRRH SVGVPEDSWG SRHERVGSYV HPNNLEQDYS RNELSHGYES QRSKRSSEMC 300 INFLRGKCIR GSSCRFIHET SIADGHGTSE MAHERDIKSY SGLDHRLESH RNNGVLCKFF 360 AAGNCRKGIS CNFSHEGAAH DRSEGRSVDD RRGRNLGDEN RSWGGSKWSD EAAVSAHGSA 420 QRCNEKSWGG SKWNDEATDS AHVSAQGCGL NDQRSNKQSV GLTWNDDEPP GNRPEGRSVG 480 ATRSDENKSW GGPKWSDEAG DSAHDTVEEQ SVNDGRIQSG WDDARWNKKP IVLTRDGEAA 540 DSEVQRFSKG GKDDNEGQSG NEDEKTSLGG PKWSDNAIGS EATKIPDWRN DNGVQNSVPV 600 TWPTQRSMDD RRDYIMDDSN RTLGGLTQSD IPSDQDVHKS PPWISDNKSA RMGVQLPRGR 660 EETLDFTSVS SDGAETHQYP HFINNERSAF GIQDIESRSR EITMLSHEQN SILSVSGQHH 720 PTIAMRPEGV THPASTVMIY PAVSAMNAQS QHIFSSPSPR LQSFDLNGPV EDFASPNPQT 780 LLYTRETIKG RGENDPKKSP ITQNITTEQV AKISHLSASL AQIFGNTQQL PQLYATLNST 840 NPYPNSTGLG ASVGGSYLQS NQNAWSQKPY DPVSSSMESS QATVPLPGNL EMPVKQNSAA 900 QADHESQTPV QSSVPSSLAG GPNGVDPSDN DNKEKMGHHQ SNELNQLEID KNGKAIDGIV 960 KEQETVRSGE ANGDGGGDED AKKSKDTKGM RMFKFALVEF VKEILKPTWK EGQLSKDAHK 1020 TVVKKVIDKV TGSVQEDHIP QTQEKIDQYL AYSKTKLTKL VEAYVERYSK T*

Sequence ? help Back to Top

Protein Sequence Length: 1072 aa Download sequence Send to blast

MTERVRKRTS KWDLTEDPPK FPIMSRQDNS SFGRGNESNH DSRSKHERNS SKNTGNRYPK  60
WPDTNPNSGL KSEGNSRWSS WEPPSGYSAD PKDDYDNRRF NEVSQTMKTW DRNRGYSTSM  120
SPGHDVWRHQ SRSRSPRSSW SKSHRSRSRS PPRRLRSRSR SPPRRLRSRS RSPPRGLRSR  180
SRSPPRGLRS RSRSPPHGLK RDLEGWNERT RGRSGVSPPL CTDFVKGRCR RGSQCRFLHQ  240
ENNDYEDRRH SVGVPEDSWG SRHERVGSYV HPNNLEQDYS RNELSHGYES QRSKRSSEMC  300
INFLRGKCIR GSSCRFIHET SIADGHGTSE MAHERDIKSY SGLDHRLESH RNNGVLCKFF  360
AAGNCRKGIS CNFSHEGAAH DRSEGRSVDD RRGRNLGDEN RSWGGSKWSD EAAVSAHGSA  420
QRCNEKSWGG SKWNDEATDS AHVSAQGCGL NDQRSNKQSV GLTWNDDEPP GNRPEGRSVG  480
ATRSDENKSW GGPKWSDEAG DSAHDTVEEQ SVNDGRIQSG WDDARWNKKP IVLTRDGEAA  540
DSEVQRFSKG GKDDNEGQSG NEDEKTSLGG PKWSDNAIGS EATKIPDWRN DNGVQNSVPV  600
TWPTQRSMDD RRDYIMDDSN RTLGGLTQSD IPSDQDVHKS PPWISDNKSA RMGVQLPRGR  660
EETLDFTSVS SDGAETHQYP HFINNERSAF GIQDIESRSR EITMLSHEQN SILSVSGQHH  720
PTIAMRPEGV THPASTVMIY PAVSAMNAQS QHIFSSPSPR LQSFDLNGPV EDFASPNPQT  780
LLYTRETIKG RGENDPKKSP ITQNITTEQV AKISHLSASL AQIFGNTQQL PQLYATLNST  840
NPYPNSTGLG ASVGGSYLQS NQNAWSQKPY DPVSSSMESS QATVPLPGNL EMPVKQNSAA  900
QADHESQTPV QSSVPSSLAG GPNGVDPSDN DNKEKMGHHQ SNELNQLEID KNGKAIDGIV  960
KEQETVRSGE ANGDGGGDED AKKSKDTKGM RMFKFALVEF VKEILKPTWK EGQLSKDAHK  1020
TVVKKVIDKV TGSVQEDHIP QTQEKIDQYL AYSKTKLTKL VEAYVERYSK T*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5DE65	0.0	A0A2G5DE65_AQUCA; Uncharacterized protein
STRING	Aquca_022_00316.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-18	C3H family protein

Link Out ? help Back to Top
Phytozome	Aqcoe5G239800.1.p