PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G233600.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NAC

Protein Properties

Length: 196aa MW: 22243.8 Da PI: 4.6539

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G233600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123	2.6e-38	8	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF Ptdeelvv++L++k+++ +++ ++i+++++y ++PwdL+ k+ ++ ++wy+Fs+r + +r+ ++g+W+ g d+++ Aqcoe5G233600.1.p 8 LPPGFRFYPTDEELVVHFLQRKAARLPCHP-DIIPDLNLYPYDPWDLDGKALSGGSQWYYFSRRTS--------TRMSANGFWQPLGIDEPI 90 79***********************999.99**********977778899**9855........577889******** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++++vg+kk Lvfy g+ap g kt+W+mheyrl Aqcoe5G233600.1.p 91 VTSnSDRKVGMKKYLVFYLGEAPMGIKTNWIMHEYRL 127 99867788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-49	5	158	IPR003441	NAC domain
PROSITE profile	PS51005	47.576	8	159	IPR003441	NAC domain
Pfam	PF02365	2.6E-23	9	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLQRKA ARLPCHPDII PDLNLYPYDP WDLDGKALSG 60 GSQWYYFSRR TSTRMSANGF WQPLGIDEPI VTSNSDRKVG MKKYLVFYLG EAPMGIKTNW 120 IMHEYRLSDT ASSSSSRSSK KKTATKDASK WVLCRVFEDN DGSQGSLCDN DQELSCLDEV 180 FLSLDDDFDE INYPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-43	4	164	13	170	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-43	4	164	13	170	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-43	4	164	13	170	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-43	4	164	13	170	NO APICAL MERISTEM PROTEIN
3swm_A	5e-43	4	164	16	173	NAC domain-containing protein 19
3swm_B	5e-43	4	164	16	173	NAC domain-containing protein 19
3swm_C	5e-43	4	164	16	173	NAC domain-containing protein 19
3swm_D	5e-43	4	164	16	173	NAC domain-containing protein 19
3swp_A	5e-43	4	164	16	173	NAC domain-containing protein 19
3swp_B	5e-43	4	164	16	173	NAC domain-containing protein 19
3swp_C	5e-43	4	164	16	173	NAC domain-containing protein 19
3swp_D	5e-43	4	164	16	173	NAC domain-containing protein 19
4dul_A	5e-43	4	164	13	170	NAC domain-containing protein 19
4dul_B	5e-43	4	164	13	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021896566.1	1e-95	NAC domain-containing protein 104
Swissprot	Q8GWK6	1e-73	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2G5DE19	1e-144	A0A2G5DE19_AQUCA; Uncharacterized protein
STRING	Aquca_022_00269.1	1e-144	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	4e-70	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Aqcoe5G233600.1.p

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]