PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G206300.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

LBD

Protein Properties

Length: 293aa MW: 32027.9 Da PI: 7.0982

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G206300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.9	1.7e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l++++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++ Aqcoe5G206300.2.p 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNPTQREDAVNSLAYEAEHRLRDPVYGCVGLISILQHKLKQVQL 98 7******************************************************************************************* PP DUF260 93 elallkee 100 el +++e Aqcoe5G206300.2.p 99 ELYNARKE 106 *9988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.144	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-43	7	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MASSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNPTQR 60 EDAVNSLAYE AEHRLRDPVY GCVGLISILQ HKLKQVQLEL YNARKELSTY IGPQAMQPLL 120 LHQAHHPQVI HPTGAMGPFG MSSMALGLPP GPSAQSQLMI RDPQQQQLYE VQQYAALAAA 180 REQQELMRGY EQQQQDLIRY NATAYDANAG GQGTGGGGGG VGGFNQMSAA MPSPLAMVPV 240 GYENAFQLQQ HQQQQQAQQD HQHQQQQQQV HSQPQPQQRT GSDEGTSVGP SS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-50	4	110	8	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-50	4	110	8	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010255134.1	1e-109	PREDICTED: LOB domain-containing protein 36
Swissprot	Q9FKZ3	3e-71	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2G5EIE1	0.0	A0A2G5EIE1_AQUCA; Uncharacterized protein
STRING	Aquca_007_00083.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-70	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	Aqcoe5G206300.2.p

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]