PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G177100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 328aa    MW: 37901.6 Da    PI: 4.9866
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G177100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.14.9e-5581371129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+e+d+y++ePwd+++     ++e+kewyfFs++dkky+tg+r+nrat +g+Wkatg+d
  Aqcoe5G177100.1.p   8 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVINEIDLYRIEPWDIQErcrIGYEEQKEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRD 98 
                        69****************************.9***************953432234677********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        k++++ k++l+g++ktLvfykgrap+g ktdW+mheyrle
  Aqcoe5G177100.1.p  99 KAIYD-KNKLIGMRKTLVFYKGRAPNGLKTDWIMHEYRLE 137
                        *****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-605157IPR003441NAC domain
PROSITE profilePS5100559.2798157IPR003441NAC domain
PfamPF023651.3E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSSIENCVPP GFRFHPTDEE LVGYYLRKKV ASQKIDLDVI NEIDLYRIEP WDIQERCRIG  60
YEEQKEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA IYDKNKLIGM RKTLVFYKGR  120
APNGLKTDWI MHEYRLESEE NGPPQEEGWV VCRAFKKRTN MQTKSSERWD SIYFYEDTSG  180
MSSFMDPVYS TSTKPPNVIC KQEVELNNAN FLQYCNEYVQ LPQLESPSPP LIHHPSLVSM  240
LSENKEDEGP TKECTNAEKV TDWRALDKFV ASQLSQEERN IDGEGVSNFE SQYNSDMGLL  300
LLDRTTSRDK FDGLLSVSTD CDIGICI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-52816217170NO APICAL MERISTEM PROTEIN
1ut4_B5e-52816217170NO APICAL MERISTEM PROTEIN
1ut7_A5e-52816217170NO APICAL MERISTEM PROTEIN
1ut7_B5e-52816217170NO APICAL MERISTEM PROTEIN
3swm_A7e-52816220173NAC domain-containing protein 19
3swm_B7e-52816220173NAC domain-containing protein 19
3swm_C7e-52816220173NAC domain-containing protein 19
3swm_D7e-52816220173NAC domain-containing protein 19
3swp_A7e-52816220173NAC domain-containing protein 19
3swp_B7e-52816220173NAC domain-containing protein 19
3swp_C7e-52816220173NAC domain-containing protein 19
3swp_D7e-52816220173NAC domain-containing protein 19
4dul_A5e-52816217170NAC domain-containing protein 19
4dul_B5e-52816217170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649056.10.0PREDICTED: NAC domain-containing protein 37 isoform X2
SwissprotQ9SL411e-138NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A2G5EJT60.0A0A2G5EJT6_AQUCA; Uncharacterized protein
STRINGAquca_007_00369.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-128vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]