PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G160100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25523 Da    PI: 6.69
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G160100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.2e-28959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+i+n++ rqvtfskRr g++KKAeELS+LCda+va+iifs tgkl+eyss
  Aqcoe5G160100.1.p  9 KKIDNTTARQVTFSKRRRGLFKKAEELSILCDADVALIIFSATGKLFEYSS 59
                       68***********************************************96 PP
2K-box58.13.7e-20851711399
              K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        + +  + ++a+L ke+ +  r++R++ Ge+L+ L+++eLqqLe+ Le++l+++ ++K++ ++++i++lq k  +l een++L++k+ 
  Aqcoe5G160100.1.p  85 ELQLENGNYARLSKEVAERSRQLRNMRGEELQGLNIEELQQLEKSLETGLSRVLETKSDWIMNEISTLQAKGAKLMEENERLKQKMV 171
                        556667789***************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.221161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-39160IPR002100Transcription factor, MADS-box
CDDcd002655.80E-40277No hitNo description
SuperFamilySSF554552.35E-31381IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.30686176IPR002487Transcription factor, K-box
PfamPF014863.4E-1791170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAREKIQIKK IDNTTARQVT FSKRRRGLFK KAEELSILCD ADVALIIFSA TGKLFEYSSS  60
SMKEILERHN LHSKNLHKLD QPSLELQLEN GNYARLSKEV AERSRQLRNM RGEELQGLNI  120
EELQQLEKSL ETGLSRVLET KSDWIMNEIS TLQAKGAKLM EENERLKQKM VEISKVQKNM  180
AIDSDVVVHE EGHSSESVTN ICSSGGPPQD YDSSDTSLEL RLKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20169169MEF2C
5f28_B2e-20169169MEF2C
5f28_C2e-20169169MEF2C
5f28_D2e-20169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1733380.0HQ173338.1 Aquilegia formosa AGAMOUS-like E 24-like protein 1 (AGL24.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254525.11e-130PREDICTED: MADS-box protein SVP isoform X2
SwissprotQ9FUY61e-107JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLF2WNM71e-137F2WNM7_AQUFO; AGAMOUS-like E 24-like protein 1 (Fragment)
STRINGXP_010254524.11e-128(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-108MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]