PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G113900.1.p
Common NameCUC3
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 364aa    MW: 41848.5 Da    PI: 5.9694
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G113900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.98e-53231511129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+++yL+ kv + ++     i+e+d++++ePw+Lp  +k +e+ wyfFs+rd+ky+tg r+nrat++gyWkatgkdkev
  Aqcoe5G113900.1.p  23 LPPGFRFHPTDEELITFYLASKVFNGRFCG-VEIAEIDLNRCEPWELPDIAKMGERVWYFFSQRDRKYPTGLRTNRATEAGYWKATGKDKEV 113
                        79*************************877.45***************87788999************************************ PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        +s+ +++l g+kktLvfykgrap+g+kt+Wvmheyrle
  Aqcoe5G113900.1.p 114 YSAsDDSLLGMKKTLVFYKGRAPRGVKTKWVMHEYRLE 151
                        *9877788****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-6318173IPR003441NAC domain
PROSITE profilePS5100558.64823173IPR003441NAC domain
PfamPF023653.1E-2824150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MMMFGMEEVL CELHGEDTNE QGLPPGFRFH PTDEELITFY LASKVFNGRF CGVEIAEIDL  60
NRCEPWELPD IAKMGERVWY FFSQRDRKYP TGLRTNRATE AGYWKATGKD KEVYSASDDS  120
LLGMKKTLVF YKGRAPRGVK TKWVMHEYRL EGDFSSFSHT FKEEWVLCRI LQKTGEKKSP  180
LFHAHTCFQE VFSSPSNFLP PMLESSTTVT QTPLHSLQNS FALKQESDLK AILNPYAIQL  240
HDFHTNFQST YSPTSIKDTS PLSSFMFKNS LSNQDSILKE PTVPKQFKRE TNFPHFQPFD  300
ATFNCMDKVQ QNLWQDPLSF EMDCSSVLGF SADDVDTVHE MSTSVAFNRT RFQMMLDPPP  360
PII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-502017612171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4351560.0FJ435156.1 Aquilegia coerulea CUP-SHAPED COTYLEDON3 (CUC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270533.11e-162PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8512e-98NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2G5EML70.0A0A2G5EML7_AQUCA; Uncharacterized protein
STRINGAquca_007_00948.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-101NAC family protein
Publications ? help Back to Top
  1. Blein T, et al.
    A conserved molecular framework for compound leaf development.
    Science, 2008. 322(5909): p. 1835-9
    [PMID:19095941]
  2. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  3. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  4. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  5. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  6. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]