PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe4G284300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | B3 | ||||||||
Protein Properties | Length: 360aa MW: 40896.5 Da PI: 9.7848 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.8 | 1.9e-18 | 193 | 288 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+++ s+v + +l +p kf+++h ++++++++++ l de+g + + ++i ++++ l++GW++F+ +++L+ gD +vF+l++ + Aqcoe4G284300.1.p 193 FVKTMLDSHVASVFWLGIPTKFCKKHlptgKKDENRNIEMDLVDEKGYRITTNHIRDRTG----LRAGWRGFAIDHKLDFGDALVFELTDPR 280 89***************************9888899******************555555....***********************97655 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +f +v +f+ Aqcoe4G284300.1.p 281 TF--KVYIFK 288 55..888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1820 | 6.0E-7 | 90 | 124 | IPR029058 | Alpha/Beta hydrolase fold |
SuperFamily | SSF53474 | 3.51E-5 | 91 | 127 | IPR029058 | Alpha/Beta hydrolase fold |
Pfam | PF00450 | 9.6E-6 | 91 | 126 | IPR001563 | Peptidase S10, serine carboxypeptidase |
SuperFamily | SSF101936 | 2.94E-21 | 189 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-19 | 189 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.71E-24 | 191 | 288 | No hit | No description |
PROSITE profile | PS50863 | 11.279 | 193 | 290 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.0E-16 | 193 | 288 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-17 | 193 | 290 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004185 | Molecular Function | serine-type carboxypeptidase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MQYSPPPQFM SPTTTTMPGV QFSNFNAASS FNAPSMPQAP QQQSTWRPPP PPTVSQPYMR 60 PPPANREAFR PPEYPLHGTS AQRSYKCEKG GVSINSHSWT KVANIIFMDT GFSYSKTKQE 120 SNISDDLSIF EKTYADNILH SCISGINLAY IRESNCLRQV PPVENISSDN RRSLKRSRKS 180 LLRERFPKWN PSFVKTMLDS HVASVFWLGI PTKFCKKHLP TGKKDENRNI EMDLVDEKGY 240 RITTNHIRDR TGLRAGWRGF AIDHKLDFGD ALVFELTDPR TFKVYIFKAC ESLESEDSTM 300 EDLPSEKTDN DLEQLKPRKK VAKRSTREKI LTLPKGDSED IGGKLKKALS YYEIKGCKQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 176 | RRSLKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-26 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe4G284300.1.p |