PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G274900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 232aa    MW: 25826.9 Da    PI: 5.6951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G274900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1863115155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        + y+GVr +k + +Wv+e+r+p  ++ k+ r++lg++ tae+Aa+a++ a+++l+g
  Aqcoe4G274900.1.p  63 PVYRGVRSRK-NDKWVCEVREP--GNkKNSRIWLGTYETAEMAARAHDVAALALRG 115
                        68*****888.8******8887..34577*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-1463115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2964125IPR001471AP2/ERF domain
PROSITE profilePS5103222.2664123IPR001471AP2/ERF domain
SMARTSM003802.7E-2564129IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-2064125IPR016177DNA-binding domain
PRINTSPR003671.3E-76576IPR001471AP2/ERF domain
CDDcd000184.11E-2865125No hitNo description
PRINTSPR003671.3E-789105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MNQKQQIGMG SSSTTSSSSS SSHLLESALS LLTYSDGVEE VILAENLPKK NAGRKKFKET  60
RHPVYRGVRS RKNDKWVCEV REPGNKKNSR IWLGTYETAE MAARAHDVAA LALRGRSACL  120
NFADSIWKLP IPESNDIKDI QKAASEAAQM FRQSSRMSPD DNVSKEKNNN NVLYWDEEAE  180
FAMPGYLASM AEGLLLSPPP LPLNVGCHDQ FNYENIDIDH VEEVSLWSFS D*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028683.12e-74LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 1A
SwissprotQ9FJ932e-65DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A2G5D4E41e-172A0A2G5D4E4_AQUCA; Uncharacterized protein
STRINGAquca_028_00229.11e-172(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.17e-51C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]