PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G147300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 425aa    MW: 47919.7 Da    PI: 6.0523
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G147300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19182232256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Aqcoe4G147300.1.p 182 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 232
                        59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF485087.08E-652159IPR000536Nuclear hormone receptor, ligand-binding domain
Gene3DG3DSA:1.10.565.107.4E-4114184IPR000536Nuclear hormone receptor, ligand-binding domain
CDDcd000182.09E-34181241No hitNo description
SMARTSM003801.3E-38182245IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23182240IPR016177DNA-binding domain
PROSITE profilePS5103222.932182239IPR001471AP2/ERF domain
PfamPF008472.2E-12183232IPR001471AP2/ERF domain
PRINTSPR003678.5E-11183194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-32185240IPR001471AP2/ERF domain
PRINTSPR003678.5E-11205221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0043401Biological Processsteroid hormone mediated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MAATTSAKNS TSSSRRSRKG CEKTLDRGSI ERQQWKSVFE ETSMSPRPVK KVKSPEHQTP  60
SNSPPSSSST TTGPSSSRLV FPFSYDGPQP IPQFHPSPLP LQHQQQQQQQ QYLNQQQMIS  120
FASNQPGYST LQQQQQQQLL QYWSDTLHLS PRGRMMMMNK FGHDGRTMFK NPMPFTSTST  180
KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEDAAL AYDREAFKLR GENARLNFPH  240
LFLGRNNSDQ AATTVPPPSS VPNSQDIVQA EQPYQPQQVL DSPPSQYMEI TPIPQDSFND  300
DLDKPDSQEN SSSGLDLSEV TASSEAQQEL TTTSIPGEGL SISPDLVWND MNDSWFNNIP  360
TGWGPSSPVW DNFDSTNNQF LQSHLNIPNS QPLEFNSSDF PQEHYNMPSA SSSSASSMKF  420
FWED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-22181239160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242006.11e-115PREDICTED: ethylene-responsive transcription factor ERF053-like
SwissprotQ9M0J36e-46ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLA0A2G5C7Y00.0A0A2G5C7Y0_AQUCA; Uncharacterized protein
STRINGAquca_078_00029.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]