PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aqcoe4G073400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 671aa MW: 74336.4 Da PI: 6.5584 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.9 | 1.1e-24 | 151 | 252 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F Aqcoe4G073400.2.p 151 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQ--QRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNRKKLVSGDAVLFL-- 238 99****************************9743..345679************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +++el+++++r+ Aqcoe4G073400.2.p 239 RGEDGELRLGIRRA 252 449999*****997 PP | |||||||
2 | Auxin_resp | 113.4 | 2.1e-37 | 277 | 358 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stksvF+++Y Pras+s Fvv+++k++k++++++++GmRfk++feted++err++G+++g+ d+dp+rWp+SkWr++ Aqcoe4G073400.2.p 277 VAKAVSTKSVFHIYYTPRASPSGFVVPLRKFSKSFDHSFAMGMRFKIRFETEDAAERRYTGLIIGIGDIDPLRWPKSKWRCI 358 6899****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-40 | 143 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-42 | 148 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.36E-22 | 149 | 251 | No hit | No description |
PROSITE profile | PS50863 | 13.366 | 151 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-22 | 151 | 252 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-24 | 151 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.0E-33 | 277 | 358 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 671 aa Download sequence Send to blast |
MDRSNFDLNN SIVDEEDDGL SVLDSFTSSS SSSSSSSTTT STVCLELWHA CAGPLISLPK 60 KGNVVVYLPQ GHLEQISEIP ISEFYDLPSH VFCRVVDVKL HAELANDELY AQVSLVPDTE 120 IQRKFKDGDI EIDGEEEEME GGNKSITPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL 180 DYTQQRPSQE LVAKDLHGVE WKFRHIYRGQ PRRHLLTTGW SAFVNRKKLV SGDAVLFLRG 240 EDGELRLGIR RAPQYKGGIP FSALCSESLK PSSLTAVAKA VSTKSVFHIY YTPRASPSGF 300 VVPLRKFSKS FDHSFAMGMR FKIRFETEDA AERRYTGLII GIGDIDPLRW PKSKWRCISV 360 RWDDDEFGRH NRVSPWEIET YTSVSGSSSF LLSGSKRNRI NLPFTRSDFP VSNGAGCLDF 420 EESLRFQKVL QGQENLEFNT PWNDIGLLNH QRAETSYFPS FSSSGMAAMG NGVRTAMGSS 480 DITYNRTGCG ESVGFHKVLQ GQEMYSNPQF GRAVVDNRVQ YDGVGKYNIP HRSMPDGECS 540 SIMNCYDGRV QPPTPSLQVS SPSSVLMFQQ ANSQGGTLRS SEDAQDNLVS NNRRGCRLFG 600 FSLIKESHAA SEDNTTTMPI TLSLDLYDSS SQPPIGSFSH LKPPKFTKTF GGSNTKAEQL 660 ISQSVMGMLI * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-114 | 28 | 387 | 4 | 361 | Auxin response factor 1 |
4ldy_B | 1e-114 | 28 | 387 | 4 | 361 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010655464.1 | 0.0 | PREDICTED: auxin response factor 3 | ||||
Refseq | XP_019078171.1 | 0.0 | PREDICTED: auxin response factor 3 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A2G5CIZ6 | 0.0 | A0A2G5CIZ6_AQUCA; Auxin response factor | ||||
STRING | Aquca_051_00062.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-173 | ARF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aqcoe4G073400.2.p |