PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G382500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 788aa MW: 91428.9 Da PI: 9.0088

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G382500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.1	6.7e-19	56	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn++A + GF +r+++s ++++e ++ Cskeg++ e++ ++r++tr+gC+a+lkvk++ ++kw+++++++eHnH ++ Aqcoe3G382500.1.p 56 NFYNRHAMRKGFGTRVKRSCIDRKTKEKNFVWLSCSKEGFKIEKEGV----VHKRPNTRVGCDAHLKVKMD-SNKWKIISFQSEHNHVCS 140 6**************************************998777....8999**********99.9************765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-15	56	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-35	261	355	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.409	531	567	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.8E-4	531	563	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.8E-5	542	569	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 788 aa Download sequence Send to blast
MNDTQPMSED ELSEDEYEDC EFADSININE NNKLNVDQDI EPKTGMTFPT YEDAKNFYNR 60 HAMRKGFGTR VKRSCIDRKT KEKNFVWLSC SKEGFKIEKE GVVHKRPNTR VGCDAHLKVK 120 MDSNKWKIIS FQSEHNHVCS PSKSHRFRSH KHMESGSKKR LELHCDAEIR VNKSFHSMVV 180 DAGGHENVPF GQKDARNYVN KYKRLKFQEG DAEAMHKYFT RMQQKNPNFF YLVDLDPEGR 240 LRNVFWADAR SRDAYKYFGD VVTFDTTYLT NRYDLKFAPF VGVNHHGQSI LLGCGLLADE 300 TSETFEWVFN AWLEAMFKHS PRAIITDQSK AMENAIIKVF PAARHRLCLW HIMKKNPYKL 360 GSMTEYKAIK KAMKNAVYES LRINEFEEVW ASMVEKHKLQ QNKWLTKLYN LRQKWRSESM 420 NAFFDGYVHA KTSLKEFVDQ YEMALEDKYE KESQADFDSF NASPPLKTSC LFESQLVKVY 480 TKAIFLKFQS ELYGMASCSK SQLRVDREIT RYAVKERVLD KNGNLLPPKT YEVYFNNGEI 540 EVSCICRLFQ HKGILCKHAL HVLNEFVDEI PSQYILPRWR KDFKRTYNDN CCSRKIDAHN 600 PVQRYDVLYP CALQILEERI LSDSKFKTVL DGFMELKKKV LNENKDMCDG DNELSATPSN 660 EQPKTFQSEN VKYLDPLQAK KIGRPKERLK HPSELGYKAS TKQRKEKSSK TKPPKLGFKK 720 SATNKIPKQN YEKESNIPCS QSVGDIPFSG SGNGSFTSLL FGFQSGLEDE SFGNSTFLGN 780 NFDLNNP*

Sequence ? help Back to Top

Protein Sequence Length: 788 aa Download sequence Send to blast

MNDTQPMSED ELSEDEYEDC EFADSININE NNKLNVDQDI EPKTGMTFPT YEDAKNFYNR  60
HAMRKGFGTR VKRSCIDRKT KEKNFVWLSC SKEGFKIEKE GVVHKRPNTR VGCDAHLKVK  120
MDSNKWKIIS FQSEHNHVCS PSKSHRFRSH KHMESGSKKR LELHCDAEIR VNKSFHSMVV  180
DAGGHENVPF GQKDARNYVN KYKRLKFQEG DAEAMHKYFT RMQQKNPNFF YLVDLDPEGR  240
LRNVFWADAR SRDAYKYFGD VVTFDTTYLT NRYDLKFAPF VGVNHHGQSI LLGCGLLADE  300
TSETFEWVFN AWLEAMFKHS PRAIITDQSK AMENAIIKVF PAARHRLCLW HIMKKNPYKL  360
GSMTEYKAIK KAMKNAVYES LRINEFEEVW ASMVEKHKLQ QNKWLTKLYN LRQKWRSESM  420
NAFFDGYVHA KTSLKEFVDQ YEMALEDKYE KESQADFDSF NASPPLKTSC LFESQLVKVY  480
TKAIFLKFQS ELYGMASCSK SQLRVDREIT RYAVKERVLD KNGNLLPPKT YEVYFNNGEI  540
EVSCICRLFQ HKGILCKHAL HVLNEFVDEI PSQYILPRWR KDFKRTYNDN CCSRKIDAHN  600
PVQRYDVLYP CALQILEERI LSDSKFKTVL DGFMELKKKV LNENKDMCDG DNELSATPSN  660
EQPKTFQSEN VKYLDPLQAK KIGRPKERLK HPSELGYKAS TKQRKEKSSK TKPPKLGFKK  720
SATNKIPKQN YEKESNIPCS QSVGDIPFSG SGNGSFTSLL FGFQSGLEDE SFGNSTFLGN  780
NFDLNNP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5F5P7	0.0	A0A2G5F5P7_AQUCA; Uncharacterized protein
STRING	Aquca_002_00987.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-150	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Aqcoe3G382500.1.p