PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G345800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NAC

Protein Properties

Length: 376aa MW: 42833.2 Da PI: 6.9835

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G345800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.5	1e-56	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL kkv+++ +++ ++i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+ Aqcoe3G345800.1.p 17 LPPGFRFHPTDEELITHYLSKKVTDSCFNA-RAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDKEI 107 79***********************999.89***********888999********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ ++lvg+kktLvfy+grapkgekt+Wvmheyrle Aqcoe3G345800.1.p 108 YR-AKTLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 143 .999*****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-64	13	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.639	17	167	IPR003441	NAC domain
Pfam	PF02365	6.3E-30	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MENISNLQGK GDEQMDLPPG FRFHPTDEEL ITHYLSKKVT DSCFNARAIG EVDLNKCEPW 60 DLPWRAKMGE KEWYFFCVRD RKYPTGLRTN RATDAGYWKA TGKDKEIYRA KTLVGMKKTL 120 VFYRGRAPKG EKTNWVMHEY RLEGKFSLYN LPKTAKNEWV LCRIFQKSSG GKKIHIPGLT 180 RLSSFDDELG PSLLPPLMDP SPYSSKNKPI VTSEVTTNHV TCFSNSMEGQ KNQEEMIDCF 240 NSPLFSAPTI NNNPSDNLIQ PSFLFSKFSL PNSIYSSQSH SNLPNFQYQG SNFIQDQAIL 300 RALLDNHGST MKQSCKTERE MISISQETSL TTDMNTEISS VMSNHEMGRQ SFHDQQDPSP 360 SSDPIDPSYD CLWSY*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MENISNLQGK GDEQMDLPPG FRFHPTDEEL ITHYLSKKVT DSCFNARAIG EVDLNKCEPW  60
DLPWRAKMGE KEWYFFCVRD RKYPTGLRTN RATDAGYWKA TGKDKEIYRA KTLVGMKKTL  120
VFYRGRAPKG EKTNWVMHEY RLEGKFSLYN LPKTAKNEWV LCRIFQKSSG GKKIHIPGLT  180
RLSSFDDELG PSLLPPLMDP SPYSSKNKPI VTSEVTTNHV TCFSNSMEGQ KNQEEMIDCF  240
NSPLFSAPTI NNNPSDNLIQ PSFLFSKFSL PNSIYSSQSH SNLPNFQYQG SNFIQDQAIL  300
RALLDNHGST MKQSCKTERE MISISQETSL TTDMNTEISS VMSNHEMGRQ SFHDQQDPSP  360
SSDPIDPSYD CLWSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-55	14	173	14	171	NAC domain-containing protein 19
4dul_B	2e-55	14	173	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258290.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-143	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2G5F4A5	0.0	A0A2G5F4A5_AQUCA; Uncharacterized protein
STRING	Aquca_002_00662.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-129	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Aqcoe3G345800.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]