PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G217600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | bHLH | ||||||||
Protein Properties | Length: 352aa MW: 39645.5 Da PI: 8.7239 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.6 | 2.5e-09 | 184 | 231 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L+ l+P + +k Ka +L + ++Y++sLq Aqcoe3G217600.1.p 184 SHSLAERVRREKISERMKQLQGLVPGC----DKVTGKALMLDEIINYVQSLQ 231 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.70E-8 | 178 | 231 | No hit | No description |
SuperFamily | SSF47459 | 9.03E-17 | 178 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-16 | 180 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.713 | 180 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 184 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-8 | 186 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MAAFSYQHST SLLDSVLLPN INKMSSTSLE DGDINTCFSS YPPPQVLLHD VVKHQENRCL 60 YNNNNNNNSY NTLIKNISSE PLVIKKSKTD SSSMVIELDS DDQKDTSVEK KRKNKDGSCL 120 SSAQSQDMSG VKTKKQKKCN NTKKDDQTGE KKSKTVKKDQ KKILEEPPTG YIHVRARRGQ 180 ATDSHSLAER VRREKISERM KQLQGLVPGC DKVTGKALML DEIINYVQSL QYQVEFLSMK 240 LASVNPVQHD FGADLSSFMI KSEKGSLGSA FASMHQSNLT QPMTYSDTTT TLTTKSNYFH 300 QDNVVFFQQQ QGQMLTAFSQ PQDNADLLWD VYDQRQRALN QYGFNNLCSF Q* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ391826 | 2e-78 | FQ391826.1 Vitis vinifera clone SS0AFA9YF22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022736961.1 | 1e-107 | transcription factor bHLH137-like | ||||
TrEMBL | A0A2G5C7U2 | 0.0 | A0A2G5C7U2_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_080_00003.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 4e-56 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G217600.1.p |