PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G194000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 701aa    MW: 81242.4 Da    PI: 7.6018
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G194000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.11.4e-1873164190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 
                        ++Y+++A++ GF +rk++s+++++ g ++ r + C ++g ++ ++k++e++r ++++  +gC+a++ + k+    + +w v +++++HnHel
  Aqcoe3G194000.1.p  73 EYYRNFARNNGFAIRKESSRSTEDRG-VYIRVYACHRYGPERIRTKSEERKRGRKKSCACGCEARMYILKKViegSIRWIVRQFHNNHNHEL 163
                        69***************999986666.999*****************999999***************9988767789*************9 PP

               FAR1  90 a 90 
                         
  Aqcoe3G194000.1.p 164 L 164
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1673164IPR004330FAR1 DNA binding domain
PfamPF105513.7E-19286379IPR018289MULE transposase domain
PROSITE profilePS509669.458558594IPR007527Zinc finger, SWIM-type
PfamPF044348.4E-8567591IPR007527Zinc finger, SWIM-type
SMARTSM005757.3E-7569596IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MSLTKTPSSG SVSCWIRKQQ CPCGERKCYI RYEEEKSEEE VQPSDELTAN NRHVDVAPPH  60
IGQVFETDDE AFEYYRNFAR NNGFAIRKES SRSTEDRGVY IRVYACHRYG PERIRTKSEE  120
RKRGRKKSCA CGCEARMYIL KKVIEGSIRW IVRQFHNNHN HELLEDDQVR HLPAYRKIPH  180
ADRERILSMY KTGCSVRHIM KVLQLDKGGN PGNLPFIDRD VRNFLQSCKK VDRGNDVSEL  240
LDICKTVKES NPEFFFDYSM DDHAKLENIA WSYGNSVRAY RLFGDVVIFY ATYREISYDR  300
LLGVWFGIDN YGKPIFFGCV LLRDETAQSY AWALQVFLRF MQSRYPQTIL TDLDLGLKDA  360
ITSLMPYTKH VTCIWHIVSK LWSWFSFPLG SRFEEFKTEF DRLYSLETKK DFECQWNQMV  420
TRFSFGPNKH ISLLFSLRTS WALPYIRGSF LANMTTAECS KSLDAFLKQM LWSQTSLESF  480
FQQVGIVAND RNQSRDEVVD EIHIKTSMPI EEHASSILTP YAFSLLQHEI VQSMQCAAIE  540
TANGSYVVRH HKKMDGGCLV SWTAKDERIC CSCREFEVSG ILCRHALRVL ALKNYFHLPE  600
KYLPIRWRQE CLLTHSNDND WSNSFQSLTS SLFAEASMTK ERVDYVHREL ARILNHVKTM  660
AASDEAALNL ESVPAMEARV GDVANGSDCN ITWNSHQLLN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026406897.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2G5CRB10.0A0A2G5CRB1_AQUCA; Uncharacterized protein
STRINGAquca_040_00049.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]