PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G168400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 791aa MW: 87918.7 Da PI: 6.4108 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.3 | 1.7e-20 | 91 | 146 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k Aqcoe3G168400.1.p 91 KKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSADLGLKPRQVKFWFQNRRTQMK 146 688899***********************************************998 PP | |||||||
2 | START | 158.9 | 4.1e-50 | 290 | 514 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 a a++el+k+ + +ep+W e++n +e + f+ + ++ea r+s+vv+m++ +l +ld++ +W ++ +a Aqcoe3G168400.1.p 290 AMNAMDELMKMCQMNEPLWIPNNsgtkEMLNMEEHAKMFPWLTNfkqqhsqVRTEATRDSAVVIMNSITLTDAFLDVN-KWMDIFPsiisRA 380 6689***************9998777766666665554433222555566889*************************.************* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 +t++ issg g l+lm+aelq+ splvp R+ f+Ry++q ++g+w+ivd +ds + + s+ R +++pSg+li++++ng+s+ Aqcoe3G168400.1.p 381 KTVQIISSGiaghasGSLHLMYAELQVQSPLVPtREAHFLRYCQQnAEEGTWAIVDFPIDSFHDSL-QYSFPRYRRRPSGCLIQDMPNGYSR 471 **************************************************************9987.9************************ PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vtwveh++++++ +h++++++v+sg+a+ga++w+a lq+qce+ Aqcoe3G168400.1.p 472 VTWVEHAEVEDKPVHQIFNHFVNSGTAFGAQRWLAVLQQQCER 514 *****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.38E-19 | 76 | 149 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 86 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.827 | 88 | 148 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-19 | 89 | 152 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.20E-17 | 91 | 149 | No hit | No description |
Pfam | PF00046 | 5.2E-18 | 91 | 146 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 123 | 146 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.593 | 279 | 517 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.21E-32 | 282 | 516 | No hit | No description |
CDD | cd08875 | 7.39E-117 | 283 | 513 | No hit | No description |
SMART | SM00234 | 2.2E-33 | 288 | 514 | IPR002913 | START domain |
Pfam | PF01852 | 4.3E-42 | 290 | 514 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.32E-16 | 551 | 771 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 791 aa Download sequence Send to blast |
MYGDCQVLST MGGNVMTSDH HSLFASPIRN PNLNFISNLA YNPFSSIIPK EEARLQIASK 60 EDEIESGSVS GHVEGASADE EQDLEEPKPK KKRYHRHTAR QIQEMEALFK ECPHPDDKQR 120 MKLSADLGLK PRQVKFWFQN RRTQMKAQQD RAENAILRAE NENLKNENFR LQAAIRSITC 180 PNCGGPAILG EMSFDEQNIR IENARLKEEL ERLSCVVSRC GGRPMHALGP PPPLLLPSVD 240 LDMNIYSRHF QEQMGACTDM IPVPSMQENS NFAGSNLIME QDKHMALQFA MNAMDELMKM 300 CQMNEPLWIP NNSGTKEMLN MEEHAKMFPW LTNFKQQHSQ VRTEATRDSA VVIMNSITLT 360 DAFLDVNKWM DIFPSIISRA KTVQIISSGI AGHASGSLHL MYAELQVQSP LVPTREAHFL 420 RYCQQNAEEG TWAIVDFPID SFHDSLQYSF PRYRRRPSGC LIQDMPNGYS RVTWVEHAEV 480 EDKPVHQIFN HFVNSGTAFG AQRWLAVLQQ QCERLASLMA RNISDLGVIP TPEARKNLMK 540 LTQRMIRTFC FNISTAGGQS WTAISDSAED TVRITTRKMT EPGQPSGLIL CAVSTTWLPF 600 SHQQVFDLLR DERRRSQLDV LSSGTSSHEV AHIANGAHPG NCISLLRINA ASNSSQNVEL 660 MLQESSTDQF SSLVVYSTID VDAVQLAMNG EDPSYIPLLP LGFVITPMNN KSGISNSGNT 720 IKSPDNGNGS TSSCSLTVGL QVLASTIPSA KINLSNVTAI NNHIGNVVHQ INAALGGGGS 780 LIEPNLKSEH * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010245210.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC3-like isoform X1 | ||||
Refseq | XP_010245211.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC3-like isoform X1 | ||||
Refseq | XP_010245212.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC3-like isoform X1 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A0A2G5ESK4 | 0.0 | A0A2G5ESK4_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_005_00546.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G168400.1.p |