PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G102500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 731aa    MW: 83261.7 Da    PI: 6.8435
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G102500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.65.7e-2063156190
               FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 
                        +fY+++Ak++GFs+r+++++ +    + it+r+f+C + g+++ + +++ k +r+r ++r+gC a +++ k+      +w++t +++ HnHe
  Aqcoe3G102500.1.p  63 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQMKPSEDGKLQRNRRSSRCGCPAYMRIVKKAdfdVPEWRITGFSNIHNHE 154
                        6***************999887455667********************9*******************98877677789************* PP

               FAR1  89 la 90 
                        l 
  Aqcoe3G102500.1.p 155 LL 156
                        96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-1763156IPR004330FAR1 DNA binding domain
PfamPF105515.1E-20279369IPR018289MULE transposase domain
PROSITE profilePS509669.235541589IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-6560587IPR007527Zinc finger, SWIM-type
SMARTSM005755.2E-4564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MSEGTSLVVE TSENDDGTEF SADDSGTIDE MPMLEDTILS RQTSVNLVPF IGQRFVSQDA  60
AYEFYCSFAK QCGFSIRRHR TRGKDGVGRG ITRRDFTCHR GGYPQMKPSE DGKLQRNRRS  120
SRCGCPAYMR IVKKADFDVP EWRITGFSNI HNHELLKSNQ VRLLPAYCSI SADDKSRICM  180
FAKAGMSVRQ MLRLMELEKG VKLGCLPFTE IDVRNFLHSF RNINRDNDAI DLLTMCKSTK  240
DNDPNFRYEF KIDAHNRLEH IAWSYASSTQ LYEDYGDAVV FDTTHRLDAY DMLFGIWVGV  300
DNHGMNCFFG CVLLKDESMD SFSWALKTFL GFMKGKAPKT ILTDQNMWLK DAVSIELPIT  360
KHAFCIWPII AKFSDWFSVQ LGSKYDNWKA EFHRLYNLSG VDEFEVGWSD MINAYGLHGN  420
KHIISLYALR TYWALPFLRS HLFAGMTSAS QAESIRAFIQ RILSSQSQLD RFVEQVALVV  480
DYKDLAGTKQ KMQHKLQKSI SKRGLRLNHM PLQFLHHMRF LQGELVLAPQ YASFQLDECC  540
FHVRHHTQVD GGCKVNWVPR KELICCSCQQ FEFSGIVCRH VLRVLSTSNC FHIPDLYLPT  600
RWCDVSFSSK PMASRDHGER VQLLESMVST LINESVQTED RLGFACEQVS ISLSHLKDFP  660
PAPTYGEPDI AYDSTSDSLI LAEVEDSDDG VEFSRKKRHF SAPCGQFGHD TNDCRVTGSE  720
GLNGDVLGFL *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259385.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_010259386.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A200R2800.0A0A200R280_9MAGN; DnaJ domain
STRINGXP_010259385.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]