PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G049600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 289aa    MW: 31767.5 Da    PI: 9.1155
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G049600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-10550244
                       SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44
                       g WT eEd+ + +a++++ ++     W++Ia+ ++  +t  ++k ++
  Aqcoe3G049600.1.p  5 GEWTREEDKAFENAIAMHWTEdnkdKWEKIASSVP-SKTVAEVKRHY 50
                       79*********************************.**********9 PP
2Myb_DNA-binding43.38.4e-14124168347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ l++ +  ++G+g+W++I+r   ++Rt+ q+ s+ qky
  Aqcoe3G049600.1.p 124 PWTEEEHRLFLLGLDKFGKGDWRSISRNYVQTRTPTQVASHAQKY 168
                        7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.961158IPR017884SANT domain
SMARTSM007171.2E-8356IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-7455IPR009057Homeodomain-like
PfamPF002492.9E-8550IPR001005SANT/Myb domain
SuperFamilySSF466891.1E-10660IPR009057Homeodomain-like
CDDcd001674.50E-9650No hitNo description
PROSITE profilePS5129418.03117173IPR017930Myb domain
SuperFamilySSF466891.45E-17119174IPR009057Homeodomain-like
SMARTSM007171.7E-10121171IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.7E-17121171IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.2E-11122167IPR009057Homeodomain-like
PfamPF002491.7E-11124168IPR001005SANT/Myb domain
CDDcd001674.40E-10124169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSNEGEWTRE EDKAFENAIA MHWTEDNKDK WEKIASSVPS KTVAEVKRHY DILLEDLKAI  60
EAGHVPLPNY VGDETRTKEN HDLKEDSKLN YSYGTGFYGV GGGSVRQGGK GGSRSEQERR  120
KGIPWTEEEH RLFLLGLDKF GKGDWRSISR NYVQTRTPTQ VASHAQKYFI RLSSMNRDRR  180
RSSIHDITSI NGGDVSSPQG PITGQQTNTT TSTATVVGQS VKHRSLPHNM PGVGMYGAPM  240
GQPISGPGGH MVSAVGTPVM LPPGHHHPAH PPYVVPVAYP VVPPTMHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-157701173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825411.11e-137PREDICTED: transcription factor DIVARICATA-like
SwissprotB8A9B29e-83MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH599e-83MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A2G5D7U40.0A0A2G5D7U4_AQUCA; Uncharacterized protein
STRINGAquca_026_00199.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.19e-71MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]