PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G034800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 288aa MW: 32126.3 Da PI: 6.6684

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G034800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.3e-08	179	226	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + k + a +L + ++Y++sLq Aqcoe3G034800.1.p 179 SHSLAERVRREKINEKLRCLQDLVPGC----YKTMGMAVMLDEIIQYVQSLQ 226 8*************************8....355999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-16	173	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.10E-10	173	230	No hit	No description
PROSITE profile	PS50888	15.688	175	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	175	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-6	179	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-9	181	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MHCSSNLMAE FAGDLHSFKP SLPFLDMEIN IELLNQFAEL NSSFLENPSL SIQNTLGFSN 60 DTFLAQKPEL PVNFVNNLPG LFCLNDSNAV PVGPSLPSVS EFPSNVHQES KKRKVSLGSD 120 SSSGNSTIPV LEDRMCGNSR TKRRNNSKRG KKGKDNEKQV EKPKEVIHVR ARRGQATDSH 180 SLAERVRREK INEKLRCLQD LVPGCYKTMG MAVMLDEIIQ YVQSLQNQVE FLSMKLTAAS 240 SFYDFNSEMD VTQTMQGTNA YEAQEMERLV RESGYGGLSC FPSTWPL*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010264190.1	1e-112	PREDICTED: transcription factor bHLH75-like
Refseq	XP_010265101.1	1e-112	PREDICTED: transcription factor bHLH75-like
Swissprot	Q8GWK7	7e-58	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A2G5CPR3	0.0	A0A2G5CPR3_AQUCA; Uncharacterized protein
STRING	Aquca_041_00009.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	1e-58	BR enhanced expression 1

Link Out ? help Back to Top
Phytozome	Aqcoe3G034800.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]