PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G017900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25517.6 Da PI: 9.6077 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++ +G g+W++ ++ g++R+ k+c++rw +yl Aqcoe3G017900.1.p 14 KGAWSKQEDDKLIDYIQAHGEGCWRSLPQAAGLNRCHKSCRLRWINYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 68 | 112 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w++yl Aqcoe3G017900.1.p 68 GNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSYL 112 78899****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.765 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.07E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.629 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.14E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MRQSSHCRKQ DKNKGAWSKQ EDDKLIDYIQ AHGEGCWRSL PQAAGLNRCH KSCRLRWINY 60 LRPDLKHGNF AEDEEDLIIK LHALLGNRWS LIAGRLPGRT DNEVKNYWNS YLKRKLINMG 120 IDPKNHRLSQ TRTLHPFSQV TEATSATSST GSRKYTWLQP TQPVANNRQE DDTSILPNLN 180 LDLTMAIPSP SLTYSEEVQQ HEDSKTAHLS FGPRHSNGSK SVM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002315890.3 | 1e-90 | myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 2e-71 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A2G5CQE6 | 1e-167 | A0A2G5CQE6_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_041_00154.1 | 1e-167 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 5e-71 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G017900.1.p |