PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G016600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 25594.5 Da PI: 6.2886 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.6e-19 | 86 | 139 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++tkeq++ Lee F++nr ++a+++ LA +lgL+ rqV vWFqNrRa+ k Aqcoe3G016600.1.p 86 KKLRLTKEQTDLLEESFKQNRVLNAKQKDALAFQLGLKPRQVEVWFQNRRARTK 139 56789***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 112.3 | 3.1e-36 | 85 | 174 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq lLEesF++++ L+ ++K +la +Lgl+prqv+vWFqnrRARtk+kq+E+++e+Lk ++ +l+een+rL++e e+Lr +l Aqcoe3G016600.1.p 85 NKKLRLTKEQTDLLEESFKQNRVLNAKQKDALAFQLGLKPRQVEVWFQNRRARTKLKQTEMECEYLKICFTTLTEENKRLQREAEQLR-AL 174 59*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 62 | 142 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.47E-19 | 73 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.892 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.1E-16 | 83 | 145 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-16 | 86 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.07E-15 | 86 | 142 | No hit | No description |
PRINTS | PR00031 | 5.6E-5 | 112 | 121 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.6E-5 | 121 | 137 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 9.2E-15 | 141 | 184 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 4.9E-7 | 141 | 174 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MASLHSSCSL ELSVSVPGFT SSSASLHSTT GDGSAKRDFD INEVPLTMEE DQESWLAKAN 60 DDKYEEQDSG GGGGGGGGDG YGSSNKKLRL TKEQTDLLEE SFKQNRVLNA KQKDALAFQL 120 GLKPRQVEVW FQNRRARTKL KQTEMECEYL KICFTTLTEE NKRLQREAEQ LRALRRVGQP 180 PNNCEPLPAE STLTMCPRCE RVTSRSSSST SNELRHSPQP SAYCPEVLRI * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010657445.1 | 6e-71 | PREDICTED: homeobox-leucine zipper protein HOX3 isoform X1 | ||||
Swissprot | Q0JKX1 | 7e-59 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 7e-59 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A2G5CQG9 | 1e-169 | A0A2G5CQG9_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_041_00167.1 | 1e-170 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 6e-53 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G016600.1.p |