PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G011900.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 683aa    MW: 78587.4 Da    PI: 7.3416
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G011900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1781.8e-2449135191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        +fYn YAke+GFsvr+++s  +k+n+e + + ++Cs eg++++++++     r+raetrtgC a l++k+  + +w+vt+++leHnH l+p
  Aqcoe3G011900.2.p  49 NFYNCYAKELGFSVRVRNSWCKKKNKEKYGAVLCCSSEGFTKKKSST----TRSRAETRTGCPAILRIKLVGNFRWKVTEVNLEHNHLLSP 135
                        6*****************************************99877....99**********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2149135IPR004330FAR1 DNA binding domain
PfamPF105512.1E-24254341IPR018289MULE transposase domain
PROSITE profilePS509668.939539577IPR007527Zinc finger, SWIM-type
PfamPF044349.6E-5551575IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-6552579IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MVDSFGEQIE TEFTIADFDN QNGVVSEVKK DLVAPSVGME FDSYDDVYNF YNCYAKELGF  60
SVRVRNSWCK KKNKEKYGAV LCCSSEGFTK KKSSTTRSRA ETRTGCPAIL RIKLVGNFRW  120
KVTEVNLEHN HLLSPENLQN KAHKSVGVGI KRKSVSDSGA GVQTCSSNQE NLVIGLSYEI  180
LSSDGRNSDN HVAENKGLEL KEGNAQAFYN FFCRMQLISP NFFYLVDLGN EGRVGNVFWA  240
DARSRAGYSY FGDVVTIDSR YLANKYEVSC VPFVGLNHHG QPVLLGCGLL ADETFESFVW  300
LFKAWLTCMS GPPPFIIITD QCKTMRQAVM EVFPGARHCY FLHYIMDKAP LELRGVRQYE  360
AVRRALNKAV YDSFRVDEFE RTWKDMVEQC GVKDHGWLQM LYHDRRQWVP VFLKDFLFAG  420
ISTTEQTECM NGFFDGYLSK QTSLKEFLGK YESALEKKRM IEAREDFDSL NLNPVLKTKC  480
CFELQMSKVY TKEIFQKFQY EVEELFSCFN TTQVHSDGPN ITYIVKERRE GEGNQREIRS  540
IEVLYNTEKQ DICCMCGLFN FKGYLCRHAL SVLNYNGVED IPAQYIVARW RNNFKRTRLL  600
NDSTNSRDVN NQAQWYDRLY RCAVQIVEEG AMSQEHYKVA LQALEESLNK VCLAEEIESR  660
MTLTTTLKPC GMYIVKNREQ RK*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247641.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A2G5C0Z10.0A0A2G5C0Z1_AQUCA; Uncharacterized protein
STRINGAquca_142_00011.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]