PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G011900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | FAR1 | ||||||||
Protein Properties | Length: 683aa MW: 78587.4 Da PI: 7.3416 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78 | 1.8e-24 | 49 | 135 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fYn YAke+GFsvr+++s +k+n+e + + ++Cs eg++++++++ r+raetrtgC a l++k+ + +w+vt+++leHnH l+p Aqcoe3G011900.1.p 49 NFYNCYAKELGFSVRVRNSWCKKKNKEKYGAVLCCSSEGFTKKKSST----TRSRAETRTGCPAILRIKLVGNFRWKVTEVNLEHNHLLSP 135 6*****************************************99877....99**********************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-21 | 49 | 135 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.1E-24 | 254 | 341 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.939 | 539 | 577 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 9.6E-5 | 551 | 575 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.0E-6 | 552 | 579 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MVDSFGEQIE TEFTIADFDN QNGVVSEVKK DLVAPSVGME FDSYDDVYNF YNCYAKELGF 60 SVRVRNSWCK KKNKEKYGAV LCCSSEGFTK KKSSTTRSRA ETRTGCPAIL RIKLVGNFRW 120 KVTEVNLEHN HLLSPENLQN KAHKSVGVGI KRKSVSDSGA GVQTCSSNQE NLVIGLSYEI 180 LSSDGRNSDN HVAENKGLEL KEGNAQAFYN FFCRMQLISP NFFYLVDLGN EGRVGNVFWA 240 DARSRAGYSY FGDVVTIDSR YLANKYEVSC VPFVGLNHHG QPVLLGCGLL ADETFESFVW 300 LFKAWLTCMS GPPPFIIITD QCKTMRQAVM EVFPGARHCY FLHYIMDKAP LELRGVRQYE 360 AVRRALNKAV YDSFRVDEFE RTWKDMVEQC GVKDHGWLQM LYHDRRQWVP VFLKDFLFAG 420 ISTTEQTECM NGFFDGYLSK QTSLKEFLGK YESALEKKRM IEAREDFDSL NLNPVLKTKC 480 CFELQMSKVY TKEIFQKFQY EVEELFSCFN TTQVHSDGPN ITYIVKERRE GEGNQREIRS 540 IEVLYNTEKQ DICCMCGLFN FKGYLCRHAL SVLNYNGVED IPAQYIVARW RNNFKRTRLL 600 NDSTNSRDVN NQAQWYDRLY RCAVQIVEEG AMSQEHYKVA LQALEESLNK VCLAEEIESR 660 MTLTTTLKPC GMYIVKNREQ RK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010247641.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A2G5C0Z1 | 0.0 | A0A2G5C0Z1_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_142_00011.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G011900.1.p |
Publications ? help Back to Top | |||
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