PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe2G434200.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | FAR1 | ||||||||
Protein Properties | Length: 254aa MW: 29573.9 Da PI: 6.3851 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78.6 | 1.1e-24 | 72 | 159 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++Y++Y+++ GF++r++++++s+ ++e++ ++vCskeg+r+++++ e+ + ++tr+gCka l++ ++ +kw+vt++ eHnHel+ Aqcoe2G434200.3.p 72 EYYDAYGRRNGFTIRVNRKRRSRVDREVIGFDYVCSKEGFRRKRQRV---EKARAKQTRVGCKAILVIAYRRdMEKWVVTNFLREHNHELM 159 69*****************************************9988...8888999************99989***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-21 | 72 | 159 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MANTSGLEFE SMDSDRDVDD GSSNEFDTVE ECDDTSGNEK TAGLPTEGLA VTVIHSEPYV 60 GMEFKSADDA REYYDAYGRR NGFTIRVNRK RRSRVDREVI GFDYVCSKEG FRRKRQRVEK 120 ARAKQTRVGC KAILVIAYRR DMEKWVVTNF LREHNHELMV PSEVPVRSDK GQLNEDEKDR 180 RIRELTTKLY NERQRFQRQC AAYEERCAAY KIQISKILKD IEVHNDHLTT KVDNVVQSIK 240 ELEEEDSQRR KDT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC253894 | 0.0 | AC253894.1 Aquilegia coerulea clone COL02-M12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026420593.1 | 1e-121 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2G5CEF7 | 0.0 | A0A2G5CEF7_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_058_00053.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 8e-33 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe2G434200.3.p |