PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G426500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 438aa    MW: 48095.4 Da    PI: 8.6807
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G426500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-095076127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++++ C ++ rtG C++G +C+F+H+p
  Aqcoe2G426500.1.p 50 PGEPDCTYYIRTGLCRFGMTCRFNHPP 76
                       5789*********************97 PP
2zf-CCCH38.81.5e-1297121327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+++++tGtCk+G++CkF+H++
  Aqcoe2G426500.1.p  97 QPECQYYLKTGTCKFGATCKFHHPR 121
                        799********************96 PP
3zf-CCCH35.91.2e-11144167427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         +C +++rtG+Ck+G++CkF+H++
  Aqcoe2G426500.1.p 144 NECAYYLRTGQCKFGNTCKFHHPQ 167
                        68********************97 PP
4zf-CCCH39.21.2e-12283309127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C+f+++tG CkyG+ C+F+H++
  Aqcoe2G426500.1.p 283 PGQPECQFYMKTGDCKYGAVCRFHHPR 309
                        5789*********************96 PP
5zf-CCCH40.16e-13329355127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++lC f++r+G+Ck+G++CkF H++
  Aqcoe2G426500.1.p 329 PGEPLCIFYSRYGICKFGPNCKFDHPM 355
                        589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0044977IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-44976IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-65176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-55477IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15994122IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-694121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-697123IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-1097121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5100121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943140168IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5140167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6141168IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4146166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596282310IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6282309IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9284309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6286312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5288310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84328356IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7328355IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10330355IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6331356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4333353IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEYDTSIPMS RGVSVAERSS LSPPLDEDTM WQMNMRSDDT MESRLYPERP GEPDCTYYIR  60
TGLCRFGMTC RFNHPPNRKL AIAAARIKGV YPERIGQPEC QYYLKTGTCK FGATCKFHHP  120
RDKAGIAGRV VLNILGYPFR PNENECAYYL RTGQCKFGNT CKFHHPQPSS TMVSLRGSPV  180
YPPVQSPSTP GQQSYPGVAN WTLSRASFIP SPRWQGPSSY AQLILPQGVV PVPGWNAYTG  240
LPSERQQQTP GNNIYGASRQ NETSQEAQGA YAFQRDNVFP ERPGQPECQF YMKTGDCKYG  300
AVCRFHHPRE RLIPVPNCLL SPLGLPLRPG EPLCIFYSRY GICKFGPNCK FDHPMGTFAY  360
GLSTSASADV PVVRRLLGSS SGISALPLSS EGPVDVVSGK SRRLSLSVTQ QMPSGAENSD  420
AEGSHTSSSI GPVASFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278934.20.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2G5CEX60.0A0A2G5CEX6_AQUCA; Uncharacterized protein
STRINGAquca_058_00125.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-162zinc finger protein 1