PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe2G393600.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | GATA | ||||||||
Protein Properties | Length: 280aa MW: 31872 Da PI: 9.8797 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.7 | 5.8e-17 | 201 | 235 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG++y++ +l Aqcoe2G393600.3.p 201 CLHCLSEKTPQWRAGPLGPKTLCNACGVRYKSGRL 235 99*****************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.9E-15 | 195 | 249 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.044 | 195 | 231 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.61E-14 | 197 | 258 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.8E-13 | 198 | 233 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.20E-13 | 200 | 249 | No hit | No description |
Pfam | PF00320 | 9.9E-15 | 201 | 235 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 201 | 226 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MTFSSLPLFL KKKNKNKSPR KLEVFLLSFF LMRMESLESA ALTFETLLDF PSDIDEEPDN 60 NDDDNNIKNP SLSLLTNNQQ INSAELTISH SDAHLHPFPV LEEELEWLNE NSFPDIDTFL 120 SVKPNSNNVA KDQSPVSVLG NSSSSLRHHP VQARSKRRRR RRSSFSDLIG QQWWVSYEPK 180 IKKKNVGATR MSMTSSSGRR CLHCLSEKTP QWRAGPLGPK TLCNACGVRY KSGRLLPEYR 240 PANSPTFSGE LHSNSHRKIL DMRRQKQNET FLPTSDQGW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 161 | RSKRRRRRR |
2 | 155 | 160 | KRRRRR |
3 | 155 | 161 | KRRRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010264014.1 | 1e-65 | PREDICTED: GATA transcription factor 1 | ||||
Swissprot | Q8LAU9 | 2e-41 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A2G5CXZ6 | 0.0 | A0A2G5CXZ6_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_034_00184.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 1e-37 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe2G393600.3.p |