PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe2G336000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 23420.7 Da PI: 9.1345 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.7 | 3.5e-24 | 19 | 66 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+ + rqvtfskRr+g++KKA+EL++LC+aeva+++fs+ gk++ + Aqcoe2G336000.1.p 19 KIQRSAHRQVTFSKRRTGLFKKASELCILCGAEVAIVVFSPAGKVFSF 66 688899***************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.8E-34 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.927 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-29 | 10 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.11E-36 | 11 | 83 | No hit | No description |
PRINTS | PR00404 | 5.3E-21 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-25 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-21 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-21 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MSPAPKRRNM GRKKIPIEKI QRSAHRQVTF SKRRTGLFKK ASELCILCGA EVAIVVFSPA 60 GKVFSFGHPS VESVVDRFLN QHDHMNHNVG LINARIREQQ QEEYTEVLNQ LQAEKKRGET 120 YEQYKKTEGD NHQYCLDAPM DDLGLHELEE MKRTLEELRS KLHDEMRKSN PFLAYNHLNN 180 QGFGMVAPFV GQSAMFWWNS NM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-16 | 10 | 78 | 1 | 69 | MEF2C |
5f28_B | 7e-16 | 10 | 78 | 1 | 69 | MEF2C |
5f28_C | 7e-16 | 10 | 78 | 1 | 69 | MEF2C |
5f28_D | 7e-16 | 10 | 78 | 1 | 69 | MEF2C |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX680236 | 0.0 | JX680236.1 Aquilegia coerulea MADS-box protein AGL75 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010277267.1 | 4e-55 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2G5CHT2 | 1e-144 | A0A2G5CHT2_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_054_00126.1 | 1e-145 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 8e-43 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe2G336000.1.p |