PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G117300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

TCP

Protein Properties

Length: 488aa MW: 53437.2 Da PI: 5.7902

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G117300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	37.9	6.3e-12	27	86	6	65
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 +++s i + RvR++a+ca + +L++eLG+ +++++i WLl+q p + Aqcoe2G117300.1.p 27 SSSSQIEKQQQRNNSRVRVPANCATGLAQLTQELGLRSNGEAIHWLLEQTRPDLVSPFTS 86 556666666677789**********************************99987665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.7E-8	42	109	IPR005333	Transcription factor, TCP
Gene3D	G3DSA:3.60.110.10	2.4E-72	171	456	IPR003010	Carbon-nitrogen hydrolase
SuperFamily	SSF56317	1.44E-68	171	456	IPR003010	Carbon-nitrogen hydrolase
PROSITE profile	PS50263	41.31	172	463	IPR003010	Carbon-nitrogen hydrolase
CDD	cd07564	1.52E-122	174	456	No hit	No description
Pfam	PF00795	1.8E-58	174	448	IPR003010	Carbon-nitrogen hydrolase
PROSITE pattern	PS00920	0	204	219	IPR000132	Nitrilase/cyanide hydratase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MEIEEQQQQQ QQQLTKKRQR VDSSDRSSSS QIEKQQQRNN SRVRVPANCA TGLAQLTQEL 60 GLRSNGEAIH WLLEQTRPDL VSPFTSQQPI TTTTTTTILK KASINKLPEN VIISNNNDNV 120 LVANPVAFAY PKDGINGKIS ALVPIANGGD FVVAQDEENI WSHHHHTIRP TVSATVVQAS 180 TVFYDTPATL DKAERLIAGA AARGSQLVVF PEAFVGGYPR FVNFDITDRS HSIEENEEFK 240 KYHAAAVHVP GPEIDRLAEI CRKYKVYLVM GVVEKEGFTL YSTLLFFDSK GQYLGKHRKL 300 ILTASESEHM VWHSGDEATA PVYRTSVGKI GGLTCWDNRL PPLRTELYVK GVEIYCAPTA 360 DARDAWKASM TNIAVEGGCF VLCANQFCQR KDYPLPSVAD GDISPDSVVC AGGSVIISPS 420 GAILAGPNYQ EESLISADLD LEEITRAKLD FDVVRHATSL GLISKDVNPG SLVPTVKSEG 480 SFSYELS*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MEIEEQQQQQ QQQLTKKRQR VDSSDRSSSS QIEKQQQRNN SRVRVPANCA TGLAQLTQEL  60
GLRSNGEAIH WLLEQTRPDL VSPFTSQQPI TTTTTTTILK KASINKLPEN VIISNNNDNV  120
LVANPVAFAY PKDGINGKIS ALVPIANGGD FVVAQDEENI WSHHHHTIRP TVSATVVQAS  180
TVFYDTPATL DKAERLIAGA AARGSQLVVF PEAFVGGYPR FVNFDITDRS HSIEENEEFK  240
KYHAAAVHVP GPEIDRLAEI CRKYKVYLVM GVVEKEGFTL YSTLLFFDSK GQYLGKHRKL  300
ILTASESEHM VWHSGDEATA PVYRTSVGKI GGLTCWDNRL PPLRTELYVK GVEIYCAPTA  360
DARDAWKASM TNIAVEGGCF VLCANQFCQR KDYPLPSVAD GDISPDSVVC AGGSVIISPS  420
GAILAGPNYQ EESLISADLD LEEITRAKLD FDVVRHATSL GLISKDVNPG SLVPTVKSEG  480
SFSYELS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3wuy_A	2e-34	172	468	16	309	Nitrilase
3wuy_B	2e-34	172	468	16	309	Nitrilase
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269\|PubMed:10574458, ECO:0000269\|PubMed:11060302}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269\|PubMed:10574458}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246167.1	0.0	PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B
Swissprot	Q42966	1e-145	NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B
TrEMBL	A0A2G5EU02	0.0	A0A2G5EU02_AQUCA; Uncharacterized protein
STRING	Aquca_004_00230.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-08	TCP family protein

Link Out ? help Back to Top
Phytozome	Aqcoe2G117300.1.p

Publications ? help Back to Top
Dohmoto M,Sano J,Tsunoda H,Yamaguchi K Structural analysis of the TNIT4 genes encoding nitrilase-like protein from tobacco. DNA Res., 1999. 6(5): p. 313-7 [PMID:10574458] Piotrowski M,Schönfelder S,Weiler EW The Arabidopsis thaliana isogene NIT4 and its orthologs in tobacco encode beta-cyano-L-alanine hydratase/nitrilase. J. Biol. Chem., 2001. 276(4): p. 2616-21 [PMID:11060302]