PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G057900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family WOX
Protein Properties Length: 278aa    MW: 30682.7 Da    PI: 8.9555
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G057900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.65.9e-203999357
                       --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       +R+t+t++q+++L++l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  Aqcoe2G057900.1.p 39 TRWTPTSDQIRILKDLYYNngVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 99
                       8*****************8678*************************************97 PP
2Wus_type_Homeobox113.51.1e-3637101265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Aqcoe2G057900.1.p  37 TSTRWTPTSDQIRILKDLYYnNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 101
                        789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-1123101IPR009057Homeodomain-like
PROSITE profilePS5007110.5634100IPR001356Homeobox domain
SMARTSM003894.1E-636104IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-73999IPR009057Homeodomain-like
CDDcd000864.03E-739101No hitNo description
PfamPF000461.6E-173999IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEPQQDPNNQ QQQLQQQQHE ENSSGSSSKS SFLCRQTSTR WTPTSDQIRI LKDLYYNNGV  60
RSPSAEQIQR ISARLRQYGK IEGKNVFYWF QNHKARERQK KRFTNDTTTM SMQRATTATG  120
HAKYITTSPG ISSPSSAGVL GVGQMGSNMG YGSVVMEKSF RDCSISPAAG GGGGGGSNMG  180
GYGSMNNNFG WIGAGVEPYP FFNKTKHIQK YEEEDFSQTE IETLPLFPMH GEDSTRFGSS  240
GNPNPNWNWF RTGDEMIGSR TSLELSLNSY SGGSINN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021274709.13e-96protein WUSCHEL
SwissprotQ8LL116e-83WUS_PETHY; Protein WUSCHEL
TrEMBLA0A2G5EW370.0A0A2G5EW37_AQUCA; Uncharacterized protein
STRINGAquca_004_00664.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.16e-41WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]