PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G024100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HSF
Protein Properties Length: 215aa    MW: 25032.5 Da    PI: 9.4541
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G024100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1101.8e-34221132102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl k+y ++ed++++ +isw+++g++fvv++ +ef++++Lp+ Fkhsnf+SFvRQLn+YgF+k+++++         weF ++ F+kgkkel
  Aqcoe2G024100.1.p  22 FLLKTYMLVEDPATDVVISWNADGTAFVVWHIDEFSRDLLPSLFKHSNFSSFVRQLNTYGFRKISTNR---------WEFYNEMFRKGKKEL 104
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  Aqcoe2G024100.1.p 105 LCNIRRRKA 113
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.31E-3317111IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.9E-3618111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.4E-5018111IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.5E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-182245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-186072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-187385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAHDQSDKEL LEFFKKSSPS PFLLKTYMLV EDPATDVVIS WNADGTAFVV WHIDEFSRDL  60
LPSLFKHSNF SSFVRQLNTY GFRKISTNRW EFYNEMFRKG KKELLCNIRR RKAWERKLLR  120
SNTPIKMTAL KETEVDQESS STSSSSSSRS NSLLEENKRL KRKNEVLTSE LTSMKNKCNE  180
LLKLVTHNTN MEQDDTNMDH DQSPMLFGVR LKCT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B1e-21201112104Putative transcription factor
5d5x_B1e-21201112104Putative transcription factor
5d5x_E1e-21201112104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279495.18e-88PREDICTED: heat stress transcription factor B-3-like
SwissprotO222304e-60HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2G5DXZ01e-156A0A2G5DXZ0_AQUCA; Uncharacterized protein
STRINGAquca_014_00743.11e-157(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-58heat shock transcription factor B3