PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G001300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NAC

Protein Properties

Length: 445aa MW: 50776.1 Da PI: 6.7094

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G001300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.8	7.1e-56	15	150	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdee++++yL +k+ ++++++ ++i evd++k+ePwdLpk+++ +ekewyfF++rd+ky+tg r+nrat++gyWkatgkdke+ Aqcoe2G001300.1.p 15 LPPGFRFHPTDEEIITNYLSEKILDTNFTA-RAIGEVDLNKCEPWDLPKRARMGEKEWYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEI 105 79***********************999.89***********99999*********************************** PP NAM 93 lsk....kgel......vglkktLvfykgrapkgektdWvmheyrle 129 ++k + + +g+kktLvfy+grapkgekt+Wvmheyrle Aqcoe2G001300.1.p 106 YNKgsggR--NnnclqlIGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 150 977651..1456666****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.28E-62	9	179	IPR003441	NAC domain
PROSITE profile	PS51005	58.774	15	179	IPR003441	NAC domain
Pfam	PF02365	7.5E-29	16	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MVDVSSSSAD EAIELPPGFR FHPTDEEIIT NYLSEKILDT NFTARAIGEV DLNKCEPWDL 60 PKRARMGEKE WYFFCQRDRK YPTGMRTNRA TEAGYWKATG KDKEIYNKGS GGRNNNCLQL 120 IGMKKTLVFY RGRAPKGEKT NWVMHEYRLE GKQLSSYHNH SNKTTVAKDE WVVCRVFHKT 180 TGVKKSPLIS DHHLLRMNSF GEDYFFDSPS VLPPLLDHPP PYFVNTNSRP PATSTSIDNN 240 NNNNNHLYDL DQFHDRMATQ TSSSMSMTTT DDGNHFYSRN MYDENINHHH HHQHDNKNLI 300 SSNNNYTMIT NINTPSKTNN YYPQIPFPNP LFSFQGSVVH SGYLQHQEKN NNSVGPHDQA 360 ILRPLTANND SQLLRQYCKV EQYSSNQSIL SMSQDTGLST DVNTEISSSV ASKHDMGGNR 420 SYEDFEGPSS SEGPVVDLEC LWNY*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MVDVSSSSAD EAIELPPGFR FHPTDEEIIT NYLSEKILDT NFTARAIGEV DLNKCEPWDL  60
PKRARMGEKE WYFFCQRDRK YPTGMRTNRA TEAGYWKATG KDKEIYNKGS GGRNNNCLQL  120
IGMKKTLVFY RGRAPKGEKT NWVMHEYRLE GKQLSSYHNH SNKTTVAKDE WVVCRVFHKT  180
TGVKKSPLIS DHHLLRMNSF GEDYFFDSPS VLPPLLDHPP PYFVNTNSRP PATSTSIDNN  240
NNNNNHLYDL DQFHDRMATQ TSSSMSMTTT DDGNHFYSRN MYDENINHHH HHQHDNKNLI  300
SSNNNYTMIT NINTPSKTNN YYPQIPFPNP LFSFQGSVVH SGYLQHQEKN NNSVGPHDQA  360
ILRPLTANND SQLLRQYCKV EQYSSNQSIL SMSQDTGLST DVNTEISSSV ASKHDMGGNR  420
SYEDFEGPSS SEGPVVDLEC LWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	13	185	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	13	185	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	13	185	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	13	185	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-54	13	185	18	174	NAC domain-containing protein 19
3swm_B	2e-54	13	185	18	174	NAC domain-containing protein 19
3swm_C	2e-54	13	185	18	174	NAC domain-containing protein 19
3swm_D	2e-54	13	185	18	174	NAC domain-containing protein 19
3swp_A	2e-54	13	185	18	174	NAC domain-containing protein 19
3swp_B	2e-54	13	185	18	174	NAC domain-containing protein 19
3swp_C	2e-54	13	185	18	174	NAC domain-containing protein 19
3swp_D	2e-54	13	185	18	174	NAC domain-containing protein 19
4dul_A	2e-54	13	185	15	171	NAC domain-containing protein 19
4dul_B	2e-54	13	185	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021663949.1	1e-145	NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	3e-93	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2G5DZ18	0.0	A0A2G5DZ18_AQUCA; Uncharacterized protein
STRING	Aquca_014_00944.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	3e-94	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Aqcoe2G001300.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]