PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G500100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 28366 Da PI: 8.9837 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 109 | 157 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 +++GVr+++ +grW+AeI+dp+ r kr++lg+f+taeeAa +++a+ ++ Aqcoe1G500100.1.p 109 RFRGVRRRP-WGRWAAEIQDPV----RrKRVWLGTFDTAEEAATVYDKAAVMFK 157 79*******.**********63....45*********************97665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 1.3E-48 | 2 | 245 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 4.68E-30 | 108 | 166 | No hit | No description |
PROSITE profile | PS51032 | 24.144 | 109 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 109 | 167 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-29 | 109 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-33 | 109 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-12 | 109 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MTVSSPVKFS EHVLSTTKLL HRQKSSSGET RQKVVRIIFT DVDATDSSSD EEEDFVRRVK 60 RHVREIDISI QQDDKVCRKN QKMKKKRFMK LPVISSPPPP SEKANEQKRF RGVRRRPWGR 120 WAAEIQDPVR RKRVWLGTFD TAEEAATVYD KAAVMFKGPD AVTNFPSKIK TAQNENSAAT 180 VKSPTSVLGY SDLTPFSNFD VDESFGFDFD FEFQFPFPEF DLPKKYGVQD EFGEFDIDFF 240 SLEAIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 106 | 172 | 11 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 132 | RRRPWGRWAAEIQDPVRRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010252020.1 | 6e-69 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | O04682 | 2e-55 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A200QTC6 | 5e-77 | A0A200QTC6_9MAGN; AP2/ERF domain | ||||
STRING | XP_010252020.1 | 2e-68 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-23 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G500100.1.p |