PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G498500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 26220.2 Da PI: 10.2327 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.6 | 5.5e-19 | 137 | 225 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k +++s+v+ +l lp +f++++ +k ++ t+tl desg++W + rk++ l++GW +F ++++L +gD +vF+l++ +ef Aqcoe1G498500.1.p 137 FVKSMLQSHVTGGFWLGLPSHFCRDFL-PK-SDETVTLVDESGEEWPTVYLARKTG----LSGGWMGFSRDHKLVDGDALVFELVKPTEF-- 220 89*********************9994.32.5569***************656665....***********************9987777.. PP EEEEE CS B3 93 vvkvf 97 +v ++ Aqcoe1G498500.1.p 221 KVYII 225 77665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-23 | 131 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-26 | 131 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.11E-29 | 135 | 226 | No hit | No description |
SMART | SM01019 | 3.7E-27 | 137 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-17 | 137 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.099 | 137 | 228 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVKAAKQTAY EQIRQQRLEE NKKRMEELNL TQLARAVTIA ASPKPSPMKR VKPRIPRQET 60 ALIQVRRSSR VAKNPAPVYK EVLLDILERP RRIFLGRHFN RRTDLSNRVY ASDEARLKAI 120 EKAEELEAKL ENGSPSFVKS MLQSHVTGGF WLGLPSHFCR DFLPKSDETV TLVDESGEEW 180 PTVYLARKTG LSGGWMGFSR DHKLVDGDAL VFELVKPTEF KVYIIKVDD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023728492.1 | 1e-98 | B3 domain-containing protein Os06g0194400-like | ||||
Swissprot | Q1G3M3 | 4e-70 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
Swissprot | Q69V36 | 1e-70 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A2G5DRL0 | 1e-168 | A0A2G5DRL0_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_016_00429.1 | 1e-169 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-63 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G498500.1.p |
Publications ? help Back to Top | |||
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