PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G495000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

M-type_MADS

Protein Properties

Length: 229aa MW: 25940.8 Da PI: 9.5258

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G495000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	55	1.1e-17	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r tf kR++g++KK +ELS+LC++e++ ii++++ Aqcoe1G495000.1.p 11 IANDSARRATFKKRKKGLMKKVSELSTLCGVEACAIIYGPE 51 89*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.058	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.6E-23	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	8.69E-22	2	86	No hit	No description
SuperFamily	SSF55455	3.14E-24	3	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-8	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.6E-18	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-8	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MARKKVKLAW IANDSARRAT FKKRKKGLMK KVSELSTLCG VEACAIIYGP EDPQPDVWPS 60 SPSDAHSVLT RFKSMPEMEQ SKKMMNQEGL LRQGISKVKE QLKKQQRENH NFELTQLMYR 120 TLNGEALPDV GTEVLHALEG VIEEKMKAIQ ERIDGLRGTT SVTPILINRT GVKMEMEAIQ 180 RQKWLEAMMN NPPHEQQHQP AGYYGGGNEF ANGVPYGDHT PWPNHFYH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAWIANDSARRATFKKRK
2	21	25	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX680242	0.0	JX680242.1 Aquilegia coerulea MADS-box protein AGL85 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008800341.1	6e-73	agamous-like MADS-box protein AGL80
Refseq	XP_009392051.1	4e-73	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	4e-41	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A2G5D4Z8	1e-171	A0A2G5D4Z8_AQUCA; Uncharacterized protein
STRING	Aquca_027_00068.1	1e-172	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-43	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Aqcoe1G495000.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]