PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G487700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family AP2
Protein Properties Length: 567aa    MW: 63838.1 Da    PI: 6.8291
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G487700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.5e-17233282155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Aqcoe1G487700.1.p 233 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 282
                        78*******************......55************************997 PP
2AP240.95.2e-13325375155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Aqcoe1G487700.1.p 325 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 375
                        89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-16233291IPR016177DNA-binding domain
PfamPF008476.8E-9233282IPR001471AP2/ERF domain
SMARTSM003801.3E-32234296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-17234291IPR001471AP2/ERF domain
PROSITE profilePS5103217.794234290IPR001471AP2/ERF domain
CDDcd000182.44E-11234292No hitNo description
PfamPF008471.6E-8325375IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-17325384IPR016177DNA-binding domain
CDDcd000181.03E-25325385No hitNo description
PROSITE profilePS5103215.527326383IPR001471AP2/ERF domain
SMARTSM003807.6E-33326389IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15326383IPR001471AP2/ERF domain
PRINTSPR003676.8E-6327338IPR001471AP2/ERF domain
PRINTSPR003676.8E-6365385IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MLDLNVISAE TIHRKEEEEE VDVISLNKKK KMMMLMMMNN NQNSNKDDLS AGTSNSSSVV  60
NAEVSSSNGA DEDSCSTHHH NNNNKFVVTT TTTATSSNST SVTWKEKDVF AIEFDILKKE  120
DFSREIETIV VDDEEEEDRN RNRNRNRNLI LQSDFVTKQF FPMTCVDELD LSLPVATMKA  180
ALSRTQSMDL CFTRSNVVGD LSEIRVLEQQ QQQQQQQKPP VKKSRRGPRS RSSQYRGVTF  240
YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVDADINFN LSDYEEDMKQ  300
MKNLTKEEFV HILRRHSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEV  360
EAARAYDKAA IKCNGREAVT NFEPSTYDSE IMEIENGGNA CNLDLNLGIT PPSSADDLNQ  420
SESVGAFNLH VDPLNLLDAK RARTDNPSLT TLGGQPLYGL AMGSKHPPMW NGGYPSFFPN  480
YEQERKIEKR VEVGSRRLSN WAWQLHGHID DSTPMPLFST AASSGFSSSS TSVSAAALHP  540
PHPPHISMTH YGYYPPSTTS QHHYRS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth. Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q8H443}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260156.11e-175PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotB8B8J21e-112AP23_ORYSI; APETALA2-like protein 3
TrEMBLA0A2G5D5C30.0A0A2G5D5C3_AQUCA; Uncharacterized protein
STRINGAquca_027_00133.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-102related to AP2.7