PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G485100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 361aa    MW: 41191.3 Da    PI: 4.9895
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G485100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-0689112226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        k  lC ff + G+C  G +CkF+H+
  Aqcoe1G485100.1.p  89 KSILCEFFKA-GQCAKGFKCKFSHD 112
                        6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-487113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-687112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15987114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-489112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.427158196IPR000571Zinc finger, CCCH-type
SMARTSM003563.6159195IPR000571Zinc finger, CCCH-type
PfamPF165434.5E-17215298IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MPPKQSKGDV AKKQKVVEDK TFGLKNKNKS KNVQKYVQNL QQSVQPKPDA TKIAAKKKKD  60
EEKAREKELN DLFKVAVSQP KVPLGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNIQRKGE  120
KIDIYSDKRD EDDTMEDWDQ EMLEKVVESK KNDYNQNKAT EIVCKYFLDA VEKKQYGWFW  180
VCPNGAKECH YRHALPPGYV LKSQMKALLE EESEKISVED EIENQRAKVA TTTPMTTELF  240
MQWKKKKMDE KEEGLAALRA DRAKQDRMSG RELFLSDASL FVDDAEAYEK YQREDPDERQ  300
KPKNNTAAEG TSTSTTSVAD AEEVDLDDDD ELDMDELNEL EASLSKTSIQ IREPGIETSS  360
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877122.10.0zinc finger CCCH domain-containing protein 11 isoform X1
RefseqXP_015877123.10.0zinc finger CCCH domain-containing protein 11 isoform X1
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A2G5D5F10.0A0A2G5D5F1_AQUCA; Uncharacterized protein
STRINGAquca_027_00153.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-152C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]