PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G464700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | WOX | ||||||||
Protein Properties | Length: 245aa MW: 27526.7 Da PI: 7.6775 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.7 | 1.5e-21 | 19 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+ +Le+l+++ r+p+ae++++++++l +++ ++V++WFqN++a++++ Aqcoe1G464700.1.p 19 SRWNPTKEQISILEALYKQgIRTPTAEQIQQITARLraygHIEGKNVFYWFQNHKARQRQ 78 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 118.1 | 3.9e-38 | 18 | 80 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+Pt+eQi iLe+lyk+G+rtP++e+iq+ita+L++yG+ie+kNVfyWFQN+kaR+rqkq Aqcoe1G464700.1.p 18 GSRWNPTKEQISILEALYKQGIRTPTAEQIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQ 80 68***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.981 | 14 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-6 | 16 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.68E-13 | 17 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.1E-19 | 19 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-9 | 19 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.46E-8 | 20 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MEEDKNVDGS VSGGAAAGSR WNPTKEQISI LEALYKQGIR TPTAEQIQQI TARLRAYGHI 60 EGKNVFYWFQ NHKARQRQKQ KQENMVYLNQ YLQNTTTTAP VFSPSLCNNV GYSPYYIPQN 120 TTPPAFCYYP QYPKVPIPST NGLRRKQQRD KKMKEMSVGD GAVYHHAHKP YGIMHTGDMN 180 EESIHNNITS SINDETLALF PVHPTGILKE NSTTSFADNS HCDQDGIEVD CGAHTFIDFL 240 GHKS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002281161.1 | 4e-71 | PREDICTED: WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A2G5D6D8 | 1e-180 | A0A2G5D6D8_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_027_00327.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 3e-46 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G464700.1.p |