PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G379500.4.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Trihelix

Protein Properties

Length: 576aa MW: 65142.5 Da PI: 6.2948

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G379500.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91	1.2e-28	427	511	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aLi +r+ + +++++++lk+ Wee+s m++ gf+rs+k+Ckekwen+nk++kk ++ ++r +s++tcpyfd+l+ Aqcoe1G379500.4.p 427 RWPEPEVKALISIRTGIAHKFQTSELKQSVWEEISGTMSSMGFNRSAKKCKEKWENINKYFKKSVASGQQR-RRSKKTCPYFDELH 511 8***************************************************************99998.677789****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.364	420	484	IPR017877	Myb-like domain
CDD	cd12203	1.38E-26	426	490	No hit	No description
Pfam	PF13837	6.5E-21	426	511	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
MTLTNISDEI SPFPDAGNLL YGERSSFPTQ KLLPIRSNGD EDSSSPTNLA SGSSSPHIVT 60 SNEDSNMEME IDGNPSSASN KGPLWEIVAK KLEQMGYEYP KDNIFSQLLA FGNRNNNNDD 120 GSEKQMSEEN GSVQAQAQPS VPPDPIDIAN MLVALHTTSA EFQENEESNR ENKGESGEEG 180 IVDVLKRKRK RRNYSEIELV LLSMVDRLMK KQEEMHKQLL DLIDKQEKER IAREEAWREQ 240 ELERHKKERE VRDRETSRNV ALISYIGKFL GKQIEVPKLP QPPRLDESQY QAQDKLRSSA 300 QKVQLIHIPV SPHPGEHQSP HPGVHQSPHP SVRQPPHLGE HQSPHPSVHQ FQHPGQHQSP 360 HPGEHQSPRP GEHQSPRPGE HQDEAENRLG STAKMVEPVQ SLQYPETPYP DDCQDQAEYK 420 LALRSNRWPE PEVKALISIR TGIAHKFQTS ELKQSVWEEI SGTMSSMGFN RSAKKCKEKW 480 ENINKYFKKS VASGQQRRRS KKTCPYFDEL HVLYQNGSLN FKTPFEVRME GEAFENRELQ 540 ACNQLAVTLV PDIVPSSTPA DFSEGIRSSL PPKVS*

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

MTLTNISDEI SPFPDAGNLL YGERSSFPTQ KLLPIRSNGD EDSSSPTNLA SGSSSPHIVT  60
SNEDSNMEME IDGNPSSASN KGPLWEIVAK KLEQMGYEYP KDNIFSQLLA FGNRNNNNDD  120
GSEKQMSEEN GSVQAQAQPS VPPDPIDIAN MLVALHTTSA EFQENEESNR ENKGESGEEG  180
IVDVLKRKRK RRNYSEIELV LLSMVDRLMK KQEEMHKQLL DLIDKQEKER IAREEAWREQ  240
ELERHKKERE VRDRETSRNV ALISYIGKFL GKQIEVPKLP QPPRLDESQY QAQDKLRSSA  300
QKVQLIHIPV SPHPGEHQSP HPGVHQSPHP SVRQPPHLGE HQSPHPSVHQ FQHPGQHQSP  360
HPGEHQSPRP GEHQSPRPGE HQDEAENRLG STAKMVEPVQ SLQYPETPYP DDCQDQAEYK  420
LALRSNRWPE PEVKALISIR TGIAHKFQTS ELKQSVWEEI SGTMSSMGFN RSAKKCKEKW  480
ENINKYFKKS VASGQQRRRS KKTCPYFDEL HVLYQNGSLN FKTPFEVRME GEAFENRELQ  540
ACNQLAVTLV PDIVPSSTPA DFSEGIRSSL PPKVS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	191	KRKRKRR
2	186	191	RKRKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5ERF4	0.0	A0A2G5ERF4_AQUCA; Uncharacterized protein
STRING	Aquca_005_00325.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	3e-27	GT-2-like 1

Link Out ? help Back to Top
Phytozome	Aqcoe1G379500.4.p