PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G231400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | MYB | ||||||||
Protein Properties | Length: 513aa MW: 55819.1 Da PI: 6.7988 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3e-17 | 35 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+++v+++G g+W+++ + g+ R++k+c++rw ++l Aqcoe1G231400.1.p 35 KGPWTAAEDAILIEYVRKHGEGNWNAVQKNSGLSRCGKSCRLRWANHL 82 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 7.8e-16 | 88 | 131 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ l+++++++lG++ W++ a+ ++ gRt++++k++w++ Aqcoe1G231400.1.p 88 KGSFSPEEERLILELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 131 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.841 | 30 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-30 | 33 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-16 | 34 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-16 | 35 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-24 | 36 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.38E-12 | 37 | 82 | No hit | No description |
PROSITE profile | PS51294 | 25.651 | 83 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-16 | 87 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-15 | 88 | 131 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 90 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-11 | 90 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MMPNSSGAVS DDASSGSGSS HGGGGGGNGS VTLKKGPWTA AEDAILIEYV RKHGEGNWNA 60 VQKNSGLSRC GKSCRLRWAN HLRPNLKKGS FSPEEERLIL ELHAKLGNKW ARMAAQLPGR 120 TDNEIKNYWN TRVKRRQRAG LPLYPQDIQK QASSFHLHQN NHHHQNRPSQ SSSPSMQLTS 180 SQQPKTGFIT PLALFDSMNY STPTSLLSQH NNSYNMNSSI NASIHNLKRF RGGNNVGSFN 240 HYSSRTPTLP SSGSLYTTTN NNNNNNYSSQ LLPAPNFQFD TNGYDFNSQT LLQNCFESNG 300 LMNPGSTFSI KQELPSSQIS QAAANAHASD NKISLAFTRS NSNSGLLEDL LQEAEAMGGR 360 EHARKEGLIQ SQDEKRRELD DFLNNNPPPS GSVFNDKAAT PRLGSGSQWD DSSSNHSSAG 420 VEIKKEATIE MNHSVEDDDL SSLLNILPST MMVSDLYNEG AETSNGQSSV TDEDMGLDMQ 480 HHLPSTSAAA TTSALDNDWT LGVWNNLPGM SC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 33 | 136 | 5 | 107 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026392638.1 | 1e-165 | transcription factor MYB97-like | ||||
Refseq | XP_026392639.1 | 1e-165 | transcription factor MYB97-like | ||||
TrEMBL | A0A2G5EPZ0 | 0.0 | A0A2G5EPZ0_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_005_00025.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 1e-73 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G231400.1.p |