PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G219900.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family WRKY
Protein Properties Length: 292aa    MW: 31989 Da    PI: 4.5792
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G219900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-2982139359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY  +Hnh+
  Aqcoe1G219900.2.p  82 DSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMMVITYACDHNHS 139
                        99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-3076139IPR003657WRKY domain
SuperFamilySSF1182901.83E-2478139IPR003657WRKY domain
SMARTSM007748.0E-3480140IPR003657WRKY domain
PROSITE profilePS5081129.91882141IPR003657WRKY domain
PfamPF031062.5E-2482138IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDGRFNNSCT TNNNQEDSEN TSDNSGEELL PSSSSFGMIS DSKITSTSSQ KRRRALQKRV  60
VSVPIADVEG SRIKGDGAPP YDSWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER  120
SRVDPTMMVI TYACDHNHSG QPIRNPSSTA STTSTIASVT VSITPKSEPE VEEQEPQQQQ  180
QESAIFTTTQ TESEQDKFTD LVIRGTGEEN DFVWFSDVAS TSDNTLLESP IYSGSSNSNK  240
GDDGDVAGTM IFPMGEEDES LFADLGELPE CSVVFQRGLF LDHRRCTLRA G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-1958138676Disease resistance protein RRS1
5w3x_D1e-1958138676Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384631e-32KM438463.1 Gossypium aridum WRKY43 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242110.11e-91PREDICTED: probable WRKY transcription factor 65 isoform X2
TrEMBLA0A2G5DF170.0A0A2G5DF17_AQUCA; Uncharacterized protein
STRINGAquca_021_00165.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-68WRKY DNA-binding protein 65