PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G188900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | GATA | ||||||||
Protein Properties | Length: 211aa MW: 23887.8 Da PI: 6.506 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.3 | 2.5e-19 | 152 | 186 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt kTplWR gp g+ktLCnaCG++yr+ +l Aqcoe1G188900.1.p 152 CRHCGTDKTPLWRLGPMGPKTLCNACGVRYRSGRL 186 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.4E-16 | 146 | 196 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.52E-14 | 148 | 208 | No hit | No description |
PROSITE profile | PS50114 | 12.004 | 150 | 182 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.6E-15 | 150 | 183 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.49E-15 | 151 | 200 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 152 | 177 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.9E-17 | 152 | 186 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEEDREWLLA NNFIDDSSFP KSGSSPLLVD SSPTSPEQIH VELEKRDLAS NGFMEDTERL 60 CPNKADELLA SLKVEILSAS PQCEGEGVCR IDSLTTSRQD LESKRRYLTD DDELSEDTQE 120 ERWPLKKKQR STKKCGRAWS LDVNPIAFVR RCRHCGTDKT PLWRLGPMGP KTLCNACGVR 180 YRSGRLVPEY RPVASPTFDC KRHSNSHRDS * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 3e-34 | GATA transcription factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G188900.1.p |