PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G154100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 32049.1 Da PI: 6.3123 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.7e-16 | 35 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd ll ++k++G +W+ +++ g+ R++k+c++rw +yl Aqcoe1G154100.1.p 35 RGTWTPEEDRLLTAYIKRYGHWNWRELPKYAGLSRCGKSCRLRWMNYL 82 89******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 58.7 | 1.3e-18 | 88 | 133 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg T eEdel+++++++lG++ W++Ia++++ gRt++++k++w+++l Aqcoe1G154100.1.p 88 RGDYTREEDELIINLHAELGNR-WSAIAARLP-GRTDNEIKNHWHTHL 133 7889******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.129 | 30 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.28E-30 | 32 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-13 | 34 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-14 | 35 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-23 | 36 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.14E-10 | 37 | 82 | No hit | No description |
PROSITE profile | PS51294 | 26.896 | 83 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-17 | 87 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-17 | 88 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-27 | 90 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.14E-13 | 91 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MMILMHNSSK ASVKTCNVLQ DMGRSSICEK TGLTRGTWTP EEDRLLTAYI KRYGHWNWRE 60 LPKYAGLSRC GKSCRLRWMN YLRPNIKRGD YTREEDELII NLHAELGNRW SAIAARLPGR 120 TDNEIKNHWH THLQKRTKRT TIVKEAKPKP NIEHGAVGRR ESAVPNCVHP NDITPLILES 180 SAVIPISPPK SSDFSSSSTY DSEVVISENQ GITDDSEISS DGFIEYDGNF WTEPFLVEDS 240 YKVNDTMPVF VNEYSVSPLA EALYPYDLYN GCDMDMLFNY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 33 | 137 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023889531.1 | 3e-82 | transcription factor MYB14-like | ||||
TrEMBL | A0A2G5D1Y7 | 1e-173 | A0A2G5D1Y7_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_030_00246.1 | 1e-173 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 1e-61 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G154100.1.p |