PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G143700.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HD-ZIP
Protein Properties Length: 835aa    MW: 92158.1 Da    PI: 5.964
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G143700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.4e-183491457
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++++eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Aqcoe1G143700.2.p 34 YVRYSSEQVEALERVYAECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 91
                       6789****************************************************97 PP
2START151.47.8e-481713762203
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +ae++++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++   +++l+d++ W +++++ e+  v   g  g +
  Aqcoe1G143700.2.p 171 IAEDTLAEFISKATGTAVDWVQMPGMKPGPDSMGIVAISHGCSGVAARACGLVSLEPM-KIADILKDRLSWFHDCRSLEVFTVFPAGngGSV 261
                        78999*****************************************************.9999999999***************99999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l++++++a+++l+p Rdf+++Ry+  l +g++v++++S++     p+   + ++vRae lpSg+l++p+++g s +++v+h dl+++++++
  Aqcoe1G143700.2.p 262 ELIYTQMYAPTTLAPaRDFWTLRYTTVLDDGSLVVCERSLSGSGAGPNasaTTQFVRAEILPSGYLVRPCEGG-SIIHIVDHLDLEAYSVPE 352
                        *****************************************999999889999*******************9.****************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXX CS
              START 180 llrslvksglaegaktwvatlqrq 203
                        ++r+l++s+   ++k++ ++l++ 
  Aqcoe1G143700.2.p 353 VVRPLYQSSKYIAQKMTISALRYI 376
                        ****************99999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6612892IPR001356Homeobox domain
SuperFamilySSF466892.4E-162994IPR009057Homeodomain-like
SMARTSM003891.2E-153096IPR001356Homeobox domain
CDDcd000862.33E-163393No hitNo description
PfamPF000468.9E-163491IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-183591IPR009057Homeodomain-like
CDDcd146862.36E-585123No hitNo description
PROSITE profilePS5084826.931161388IPR002913START domain
SMARTSM002347.0E-40170379IPR002913START domain
SuperFamilySSF559618.38E-33170381No hitNo description
PfamPF018521.3E-45171377IPR002913START domain
Gene3DG3DSA:3.30.530.203.5E-19171355IPR023393START-like domain
SuperFamilySSF559611.65E-6402493No hitNo description
SuperFamilySSF559611.65E-6524593No hitNo description
PfamPF086703.1E-51691833IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MAMNNNVESS SSGSFNRQQQ QQLQQQQDDG SGKYVRYSSE QVEALERVYA ECPKPSSMRR  60
QQLIRECPIL SNIEPKQIKV WFQNRRCREK QRKEACRLQT VNRKLSAMNK LLIEENDRLQ  120
KQVTHLVCEN GFMRQQLHNP SATTDASCDS VVTTPQPPLK DENNPAGLFS IAEDTLAEFI  180
SKATGTAVDW VQMPGMKPGP DSMGIVAISH GCSGVAARAC GLVSLEPMKI ADILKDRLSW  240
FHDCRSLEVF TVFPAGNGGS VELIYTQMYA PTTLAPARDF WTLRYTTVLD DGSLVVCERS  300
LSGSGAGPNA SATTQFVRAE ILPSGYLVRP CEGGSIIHIV DHLDLEAYSV PEVVRPLYQS  360
SKYIAQKMTI SALRYIRQIA QETSGEVVYN FGRQPAVLRT FSQRLNRGFN DAVNGFSDDG  420
WSLINCGGSE DVTIAVNTMK NPLLGGVLCV KASMLLQNVP PALLVRFLRE HRSEWADYNI  480
DAYSAASVKS GTHAFPGLRP TRFSGNQIIM PLGHTVEHEE MLEVIRLEGH ALTEEDAVIS  540
RDIHLLQICS GIDENAVGAC SELVFAPIDE MFPEDVPLLP SGFRIIPLES KSDALISQQT  600
LDLTSSLEVT AAPTRAAEET SSVTYNTRSV LTIAFQFPFE HHLQDTIASM GLQYVRNVIC  660
SVQRVATAIA PSGMSPHIGL KLSPGSPEAV TLAQWICQSY SHHFRTELLR PHNEGGDSVL  720
KMLWHHPDAI LCCSMKSLPV FTFANQAGLD MLETTLVALQ DITLDKIFDE AGRKAMYTDF  780
AKIMQQGCAC VPAGTCMSTM GRHVSYEQVV AWKVLGEENN VHCIAFAFIN WSFM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264677.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
RefseqXP_010264678.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
RefseqXP_010264679.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2G5D1H30.0A0A2G5D1H3_AQUCA; Uncharacterized protein
STRINGAquca_030_00162.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]