PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G142600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 374aa    MW: 40510.9 Da    PI: 4.7886
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G142600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17279312134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Aqcoe1G142600.1.p 279 CLHCEITKTPQWRAGPLGPKTLCNACGVRYKSGR 312
                        99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-14273323IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.279273309IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-14277336No hitNo description
Gene3DG3DSA:3.30.50.103.3E-14277310IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.95E-14278325No hitNo description
PfamPF003202.7E-15279312IPR000679Zinc finger, GATA-type
PROSITE patternPS003440279304IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEGGDFMDDI GNLDFRGDLF DHIDDLLDFP CEDIQGEIIV GGGGSGGGCS GAVGSNLNGG  60
FQGVWQAPQD GLSASPSLFS NPINNSGFPT DLPVPDEDIA QLEWLSTFVE DSFSPGSVTF  120
NEYLDSNKND NDENKNKNSN NENKNINIDS EDTHRFQTPS PVSVLESSSS CSGGRTMPIS  180
PETVVPGRAR TKRPRPTTFN HRPVISLVSP TSSVTDPSPM SSSLESVSEF ENFAESNPST  240
KLSKPPSTEQ KKRKKKRLAP TSSSMEQSVL PLPMAVRKCL HCEITKTPQW RAGPLGPKTL  300
CNACGVRYKS GRLFPEYRPA ASPTFVPKLH SNSHKKVLEM RGTTGSKMAN DDEDDEAAVT  360
EFVPGNRLWD AYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191195KRPRP
2250254KKRKK
3250256KKRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264666.11e-107PREDICTED: GATA transcription factor 8-like
TrEMBLA0A2G5D1H60.0A0A2G5D1H6_AQUCA; Uncharacterized protein
STRINGAquca_030_00151.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-38GATA family protein