PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G095500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 570aa    MW: 64240 Da    PI: 6.6675
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G095500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.2e-15351111496
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        + l +p +fa+++  +   s    l d+sg +W vk+  +++ ++++l++GW+ F  ++ L  g+ ++F++ g+ +f  +v++
  Aqcoe1G095500.1.p  35 KKLLIPQNFARQIADN--LSEVALLVDPSGSTWHVKF--NRTTDGTYLEDGWEIFSIDHSLSRGECLLFEYFGNLKF--TVMI 111
                        4599*********877..7778999************..********************************998777..5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.01522115IPR003340B3 DNA binding domain
SMARTSM010192.9E-725115IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-1728114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.2E-1731115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-1334112No hitNo description
PfamPF023622.0E-1235111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MIAHVPHGFR KVQYTSRRME MRKRYFRVVI QGLEKKLLIP QNFARQIADN LSEVALLVDP  60
SGSTWHVKFN RTTDGTYLED GWEIFSIDHS LSRGECLLFE YFGNLKFTVM IYAPSTMLRE  120
DCFVGNSSQE LAQCGGRKRH TEFSKARGTK GAIDKEVPFS STSARSAAKK ILQPLKLVKK  180
DPFLDSVVGT GTKRRASEHI VTPTFSDLDV EIIDITCHAS PSALQRDQTY HRNIRAKTRR  240
SKKTETPSSA FHTNQGKKKA SSSFPEDDEE IFDDLMFFSY DHDEQGIPSS MSPTAVQTEP  300
ETDYVPPPAT STPSIIPDGT PPAPSRKSSI DRKRKQKVGK VFSGDQDTSK DPTQDNPPEN  360
HPMVSQFWRW GDKKEGPIDI LDTVADPETA VGVLHGSVLP GDKHKIEGLA DLEEVKNLSS  420
VHLASFNSLF VGLWDRVASE RRRVEEFADL ATAKESLEKQ VAELTQELEE ARKSVMENQQ  480
HKLRALKWEL RFNDADHDRK KVETIKNYLQ SENQSLKGEL DHARSNLAAL RKEIRESMSQ  540
QAQELESPRM GNTQASDELA QNDDETSFT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168179KKILQPLKLVKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EFM60.0A0A2G5EFM6_AQUCA; Uncharacterized protein
STRINGAquca_009_00848.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.16e-13B3 family protein