PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G074300.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | YABBY | ||||||||
Protein Properties | Length: 166aa MW: 18161.5 Da PI: 10.2574 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 187.2 | 8.1e-58 | 1 | 139 | 23 | 170 |
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp 114 +vsvP tslf+vvtv CGhC++llsvn++ +q + +++l+ ++++ +++++++ s + ++sa++ + +++e++e +r+ p Aqcoe1G074300.3.p 1 MVSVPCTSLFNVVTVGCGHCANLLSVNMKALVQPNPPHQNLQ----NHQKTSSGTSSKDCGSSSTITKSATS-----SDNSSENREPQRMLP 83 59***********************99888888777777643....33344444444444444433333333.....334567788889999 PP YABBY 115 virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + PPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Aqcoe1G074300.3.p 84 IRPPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 139 9999**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.5E-61 | 1 | 139 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.27E-8 | 85 | 132 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.4E-5 | 88 | 131 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MVSVPCTSLF NVVTVGCGHC ANLLSVNMKA LVQPNPPHQN LQNHQKTSSG TSSKDCGSSS 60 TITKSATSSD NSSENREPQR MLPIRPPPEK RQRVPSAYNR FIKEEIQRIK ASNPDISHRE 120 AFSTAAKNWA HFPHIHFGLM MDGSKRLKVG EGFTADGTQK SHGFF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF277378 | 5e-65 | JF277378.1 Aquilegia flabellata clone AA12 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010651636.1 | 1e-72 | PREDICTED: putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 3e-60 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A2G5EER6 | 1e-120 | A0A2G5EER6_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_009_00652.1 | 1e-118 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 7e-55 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G074300.3.p |
Publications ? help Back to Top | |||
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